Actinidia eriantha (wild kiwifruit): 130758531
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Entry
130758531 CDS
T09464
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
aew
Actinidia eriantha (wild kiwifruit)
Pathway
aew03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aew00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130758531
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aew03019
]
130758531
Enzymes [BR:
aew01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130758531
Messenger RNA biogenesis [BR:
aew03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
130758531
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
OB_NTP_bind
R3H
HA2_C
DEAD
HA2_N
Ank_5
Ank_2
AAA_22
nSTAND3
ATPase
AAA_19
Ank
AAA_16
ABC_tran
AAA_7
Ank_3
Sigma54_activat
NACHT
AAA_23
Motif
Other DBs
NCBI-GeneID:
130758531
NCBI-ProteinID:
XP_057469455
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All DBs
Position
21:574387..593531
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AA seq
1220 aa
AA seq
DB search
MTPTAPSSSAKKKQKNGKGPKPTDGKGPKVTEAYRIRINEILERFRTSEDDVYTFEADLS
NQERRFVHETCRKMGMKSKSSGHGNQRRLSLYKNKKKVDTTKEKENLTSFTFSEEARGVL
QNLFTQYPPDDQEGDEIVAKHRRRTENLRYNRDDIFNRPLMCQGEIAKKVGSLASRVEKS
PDLRQITEERAKLPIASFRDVITSTVESNQVVLISGETGCGKTTQVPQFLLDDRWGKRES
CKIVCTQPRRISATSVAERISCERGENIGESVGYKIRLESKGGRHSSIVFCTNGVLLRVL
VSKGTGKLKAVSPKTPPRDDVSDITHIIVDEIHERDRNSDFMLAILRDMLPSYPHLRLVL
MSATLDAERFSQYFGGSPIIRVPGFTYPVKVFYLEDVLSILKGAESNHLDCTSEDTTAEQ
FELTEEYRIALDEAINLAWSNDEFESLLDLVSSEGTPQIFNYQHSLSGMTPLMVFAGKGR
VGDVCMLLSFGADCHLRANDGTTALELAERENQEEAADIIRNHMEKVPSNSEEEKELLNK
YLSTSNPELVDVVLIEQLLRKICMDSTDGAILVFLPGWDDINKVRERLCTSPFFKNSSKY
IISALHSMVPSEEQKKVFRKSPPGCRKIVLSTNIAETAITINDVVYVIDSGRMKEKSYDP
YDNVSTLQTSWVSKASAKQREGRAGRCQPGICYHLYSKLRAASLADFQVPEIKRTPIEEL
CLQAKLLEPNCKIEDFLSKTLDPPVFETIRNATIVLQDIGALSVDGELTDLGEKLGALPV
HPLISKMLLFAILLKCLDPALTLACAANYRDPFTLPMLPNEKKRAAAAKSELALLSGGNS
DQLAVIAAFECWKNAKNKGQEKQFCSEYFVSSGTMSMLSRMRKQLQNELLRHGFIPEDVS
SCNLNAHDPGILRAVLVSGLYPMVARLRPPLRNTRRFVETAGGDKVRLHPHSSNFKLSFM
KSSDRPLIVYDEITRGDGGMHIRNCSVTGPLPLLLWATEIVVAPVNDTDDGDDDESDYED
TDEDKIDEDKTEIQNKSGAQSGNKIMSSPDNAVKVVVDRWLSFESTALDVAQIYCLRERL
SSAILSKVICPRKILPPFLGASMHAIACVLSYDGLSGVSLQSEPVDALTSIVNATEINQS
TPRGTEMMGQDSNRFLKSLMFSHTRRNTPSNLPTNIPPPYVLTMNSNGLTLVNSGGALRG
SGIVGPLAPMGDSTKRQRGN
NT seq
3663 nt
NT seq
+upstream
nt +downstream
nt
atgacaccaacagcgccttcatcttcagcgaagaagaaacaaaagaatggaaagggaccg
aaacctaccgatggaaagggtccgaaagtcaccgaagcctatcgcattcgaataaacgaa
atcctcgagagattccgtacatccgaagatgatgtgtatacttttgaagccgatctttca
aatcaggaacgtcgtttcgtgcatgaaacatgcaggaaaatgggtatgaagtccaaaagt
tcagggcatgggaatcagcggcgactctctctttacaaaaataaaaagaaagtggacact
accaaggagaaggaaaatctcacttcttttacattttcggaagaggcaagaggagtttta
cagaacttatttactcaatatccccctgatgatcaagagggtgatgaaatagtggcgaaa
cataggagaaggactgaaaatttgcgatataacagagacgatatttttaacagaccattg
atgtgccagggtgaaattgcaaaaaaagtgggatcacttgcttctagggtagaaaagtcc
ccagacttgagacagattactgaagagagggctaagcttccaattgcatcattcagggat
gtgattacatcaacagtagaatctaatcaggtagtgcttatatctggtgagactggatgc
ggaaaaaccacacaggttccgcagtttcttttggatgataggtggggaaaacgggagtca
tgtaaaattgtctgcacgcaaccacgacgaatctcagcaacgtcagttgctgagagaatc
tcctgtgaaagaggcgaaaatattggagaaagcgtgggatacaagattcgtttggagagc
aaaggtgggaggcactcatctatagtgttttgcaccaatggggttctgttgagggtgttg
gtttctaaaggcactggaaagttgaaagcagtctctccgaaaacaccaccaagggatgat
gtttctgacataacccacattattgtggatgaaattcacgaaagggatcgcaactccgat
ttcatgttagcaattctgagagacatgcttccttcttatcctcatctgcgtttggtatta
atgagtgctacacttgacgccgaacggttttcacaatattttggtggctccccaattatc
cgagtccctgggttcacttatcctgtcaaagttttttacttggaggatgtactttctatt
ctgaaaggggcagaaagtaatcaccttgattgtacttcagaagacaccacagctgagcag
tttgagttgactgaggaatacagaattgcccttgacgaggctattaatttagcatggtca
aatgatgagtttgaatccctcctagatttggtttcttctgaaggaaccccccaaattttc
aattaccagcattcgttgagtggaatgacaccactaatggtgtttgcggggaagggcaga
gtaggtgatgtttgcatgctcctttcatttggtgcagactgccatttacgagccaatgat
ggaactactgcactagagttggctgaacgagagaatcaggaagaagctgctgatatcatt
agaaaccacatggaaaaagtcccctccaactctgaggaagaaaaagaattactcaataaa
tatctatccactagtaatcctgaacttgttgatgttgtcctcatagagcagttattgagg
aaaatttgtatggattcaacggatggagctatccttgttttccttcctgggtgggatgat
ataaacaaagtgagggagagattatgtactagcccctttttcaaaaactcctctaagtat
ataatatcagctcttcactccatggtcccatctgaagagcaaaagaaggttttcagaaag
tcccctccgggttgccgcaaaattgttctttcaactaacattgctgagactgcaatcacc
ataaatgatgttgtttatgttatagacagtggacggatgaaagaaaaaagttatgacccc
tatgacaatgtgtcaactcttcagacttcttgggtttcaaaagcaagtgcaaagcaacga
gagggacgtgcaggacgctgccagccgggaatttgttatcacctttattcgaaacttcgg
gccgcttcattggctgatttccaagtacctgaaattaagaggacgccgattgaggaactt
tgtttgcaggcgaagctgcttgaaccaaattgcaaaatagaggatttcctgagcaaaaca
ctggaccctccagtttttgaaactatacgtaatgcaacgattgttcttcaagatatcggg
gccttgtcagttgatggagaactcacagaccttggggagaagcttggtgctttaccagtt
catccattaattagcaagatgcttttatttgccatactattgaaatgccttgatcctgcc
ttaacattggcttgtgccgctaactatagagatccatttacccttcccatgttgccaaat
gaaaaaaagagagctgcggctgctaaatctgagctggcattattgtctggtgggaatagc
gaccaactagcagtaatagctgcatttgagtgttggaagaatgccaagaataagggccaa
gaaaaacagttttgttctgaatactttgtgtcctcgggcaccatgagcatgctctctaga
atgcgtaagcaactccaaaatgaattactccggcatgggttcattccagaagatgtatca
agttgtaacttaaatgcacatgatccaggtatactccgtgccgtccttgtttctggtctc
tatccaatggtggcgagacttcgtccacctttgagaaatacaagacgattcgtagagact
gctggtggtgacaaagtgcgattgcatcctcattcctctaacttcaaattatcatttatg
aaatctagtgatcgacctttgatcgtgtatgatgagataacacgaggggatggaggtatg
cacattaggaactgtagtgttaccgggccactcccattattattatgggcaacggagatt
gtagtggctcctgttaatgatactgatgacggcgatgacgatgagagtgattacgaagat
actgatgaagataaaattgatgaagataaaaccgagatacagaataaatcaggtgcacaa
tctggaaacaagatcatgtcttctccggataatgctgttaaggtcgttgttgaccggtgg
ctttcttttgagtccactgcccttgatgttgctcaaatatactgccttagagagagacta
tcttctgcaatcctttccaaagtaatatgtccacggaaaattcttcctccatttcttgga
gcttctatgcatgcaatagcctgtgtcctatcttatgatggcctgtcgggggtctcattg
caatcagaacctgttgacgcactgacttcaatagtgaatgcaactgaaattaaccaatca
acacctcgggggacagaaatgatgggtcaggattcaaatcgttttctcaagtctcttatg
ttcagccatacacgccggaacactccttcaaatctgccgacaaacattcctcctccatat
gtgttaacaatgaattcaaatggcttaaccttggtaaattctggtggagctctgcgtggt
tcggggatcgtgggaccacttgctcctatgggggattctactaagcgtcagcgtggtaat
tga
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