Asticcacaulis excentricus: Astex_1372
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Entry
Astex_1372 CDS
T01378
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
aex
Asticcacaulis excentricus
Pathway
aex03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aex00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Astex_1372
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aex03400
]
Astex_1372
Enzymes [BR:
aex01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Astex_1372
DNA repair and recombination proteins [BR:
aex03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Astex_1372
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
Caerin_1
Motif
Other DBs
NCBI-ProteinID:
ADU13042
UniProt:
E8RPE4
LinkDB
All DBs
Position
1:1474686..1477229
Genome browser
AA seq
847 aa
AA seq
DB search
MGLDLYNKKRDFAKTAEPEGKPGRKSGQRFLIQKHDARRLHYDFRLELDGVLKSWAVTRG
PSPNPQDKRLAVEVEDHPVAYGTFEGIIPKGQYGGGTVMMWDEGTWEPLDDPHKGLKAGS
LKFVLHGKRLSGEWALVRMKPRPKGPDRANWLLIKHDDAAARDDAAEAWLETQATSITTG
RRMEEIATNTQRVWTSRTRDEPPKRKQSKSMLEFIEPELATLAVAVPKGKDWVHEIKFDG
YRTQALIENGEVRLLTRTGLDWTHRFRPLPDYLAQMPVTSAILDGEIVAVDEGGRADFKT
LQATLAGEADVPLQFYVFDLLHSDGEDLRALPLVSRKARLQRLFNGNHFGGRVHYSEHFT
KDAADLKDRLCALDQEGLICKRANAPYHSGRNRAWLKVKCHKRQEFVIGGFTLPKAGSKG
IGALLIGYFQEGRLTYAGKVGTGFTLDSAIDLRRRLDLIAQKYHPFSDIPPEFKRGAHWV
APHLVAEVQFGEWTSDGRLRHPSFQGLREDKPPQDIHRDRPLSPTEVRKAEDVPAARKPK
RRAPASEKSPTDVVGGVAISSPDRVVFPGTDITKKDVAEYYLSVADHILPHIAGRPISTI
RCPQGIGGQCFFQRHLTQAAIPHVNDTGLPVNGREDDYIMITDAHGLISLMQWGVMEIHP
RGCMATTPNRPDRLIFDLDPDPEADWADVVAGAAEVRERMTEFDLQSFLKTTGGKGLHVV
IPIQPQYDWSAIKAFTRAVAESMTHDSPRRFVAQASKSKRKGRVFIDYLRNDFTATAVAP
YAVRARPGAPVAMPIDWKALSRDLDPAGFTLENTPAHLGRRKADPWADMARMNQRLSPKI
LKALNII
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
atgggtctcgacctatataacaaaaagcgcgactttgccaaaaccgccgagccggagggc
aagccgggacgtaagagcggccaacgcttcttgatccagaagcacgatgccaggcgcctg
cactatgatttccgacttgagctggacggggtgctgaaatcgtgggcggttactcgcggc
cccagcccaaacccgcaggacaagcgactggcggttgaggtggaggaccaccccgtcgcc
tacggaacctttgagggcatcattccaaagggccagtacggtggcgggacggtgatgatg
tgggacgaagggacttgggaaccattggacgacccgcataaggggctgaaggcgggcagt
ctcaaattcgtactccacggcaagcggctcagcggcgaatgggcactagtgcgcatgaag
ccacgaccaaaaggccctgatcgcgccaactggttgctgatcaaacacgatgatgcggcg
gcacgcgacgatgcggccgaggcgtggctggaaacccaggcgaccagcatcaccacggga
cgtcgaatggaggagatcgccacgaacacccaacgtgtttggacatcacgaaccagggac
gagccgccgaaacgcaagcagtccaaatcaatgcttgaatttatagagccggagttggca
accctcgccgtcgcggtccccaaaggtaaggactgggtgcatgagatcaagttcgatggt
taccgaacgcaggccctgatcgaaaatggcgaggtgcgacttctgacacgcacgggcctg
gactggacgcaccgctttcgtccactgcctgactatttggcgcagatgccggtcaccagc
gctatacttgatggtgagatcgtcgccgtggacgaggggggccgtgcggatttcaagacc
ctccaggccaccctggccggagaagccgatgtgccattgcaattttatgtcttcgatctt
ctgcacagcgacggcgaggacttgcgcgcccttccgctcgtgtcacgtaaggccagactg
caaaggctgtttaatggcaatcatttcggcggacgtgttcactacagcgaacattttacg
aaggatgccgctgatctgaaggaccggctctgcgcgttggatcaggaaggcctgatctgt
aaacgcgccaatgcgccttaccactcagggcgcaaccgtgcatggctgaaggtcaagtgc
cacaagcggcaggaattcgttatcggtgggttcaccctccccaaggccggcagtaagggg
attggggctttgctgatcggctattttcaggagggccgcctgacctatgccggtaaggtg
gggacgggttttactctcgacagcgccatcgacctgcgccgcagactggacctgatcgct
caaaaatatcatccgttcagtgatattccgccagaatttaaacgcggggcgcattgggtc
gcgccgcaccttgtcgccgaggtgcagttcggcgaatggacttcagatggccgcttgcgc
cacccctcgtttcaaggcctgcgtgaagacaagccgccgcaggacatccaccgcgaccgc
ccactcagcccaactgaagtgcgcaaagccgaggacgtacctgcggctcgcaagcccaag
cgccgggcccccgcatcagaaaaatccccgacagacgtggtcggtggggtcgcgatctcg
tcgccagaccgcgtcgtttttcccggcacggatatcaccaagaaggacgtggctgagtat
tatctcagcgtcgccgaccatatcctgccgcacattgccgggcgtcccatctcaacgatc
cgctgcccacaaggcattggcggacaatgttttttccaacgccacctcacccaggccgcc
atcccgcacgtcaacgataccggtcttccggtcaatggccgcgaagacgattacataatg
attacggacgctcacggcctgatcagcctgatgcaatggggcgtgatggagatacacccc
cggggctgcatggccaccacgcccaaccgtcccgaccgcctgatcttcgatctcgacccc
gatccggaagcggactgggccgacgtggtggccggggcggctgaggtgcgcgagcgtatg
accgagttcgacctccagagtttcctcaaaaccacgggtggcaagggattgcacgtggtc
atccctattcaaccccagtacgactggagcgccatcaaagcctttacgcgtgccgtggcg
gaatccatgacgcacgacagcccgagacgctttgtggcgcaagcatcaaaatccaagcgc
aaaggccgagtctttatcgattacctgcgcaatgacttcaccgccaccgccgtggctccc
tatgctgtccgcgcgcgtcccggtgcgcccgtggcgatgccgatagattggaaggcactc
agccgcgacctcgatccggcaggtttcaccttggagaacacacctgctcatctcggacgg
cgcaaggccgatccgtgggcagatatggctcgaatgaatcagcgcctgtcgccaaaaata
cttaaggcgttgaatattatttaa
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