Anoplopoma fimbria (sablefish): 129093293
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Entry
129093293 CDS
T09102
Symbol
exosc5
Name
(RefSeq) exosome complex component RRP46
KO
K12590
exosome complex component RRP46
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129093293 (exosc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afb03019
]
129093293 (exosc5)
Messenger RNA biogenesis [BR:
afb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
129093293 (exosc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
129093293
NCBI-ProteinID:
XP_054457246
LinkDB
All DBs
Position
1:27356023..27360770
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AA seq
219 aa
AA seq
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MEVCGSSNVTLREFGCEQSLLSRPDGSASFIQGDTSVLAAAYGPAEVKVSKEIYDRATLE
VLIQPKVGLPSVRERSQEQCVRETCEASLLLSLHPRSSLTLILQLIHDDGSLLSCFLNAA
CMALMDAGLPMSCLFCGVTCAIDTDGQIITDPTAAQEKESRAVMTFAIDSTERRVMMSST
KGSFSVNEMQQCIAVSQKASEKIFQFYRDSVRRRYSKTL
NT seq
660 nt
NT seq
+upstream
nt +downstream
nt
atggaagtgtgcggctcttcaaacgtgactctgagagagtttggttgtgagcagagttta
ctgtctcgacctgacggctcagcgtccttcattcaaggagacacaagtgtgttggctgca
gcgtacggaccagctgaggtcaaggtcagtaaggaaatctatgaccgggcaacactggag
gtgttgatacagcccaaagtgggactgccaagtgtaagggagcgatctcaagagcagtgt
gtgcgagaaacctgcgaggcatctctgctcttgtcacttcatccgcgctcctccctcact
ctcattcttcagctgatacatgatgacggttcactcttgtcctgctttttgaatgctgcc
tgcatggctcttatggatgcgggcctgcctatgagttgcctgttctgtggagtgacctgt
gccatcgacacagacggtcaaatcatcacagaccccactgcagcacaggaaaaggaaagt
cgggccgtgatgacctttgctattgacagcacggaacgcagagtaatgatgtcatccacc
aaaggatcattttcagtaaacgagatgcagcagtgtattgcagtcagtcagaaagcatca
gagaagatcttccagttctacagagattctgtcaggcgccgatactccaaaaccctctga
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