Anoplopoma fimbria (sablefish): 129097677 Help Entry 129097677         CDS       T09102                                  Symbol col11a2 Name (RefSeq) collagen alpha-2(XI) chain   KO K19721   collagen type V/XI/XXIV/XXVII, alpha Organism afb  Anoplopoma fimbria (sablefish) Pathway afb04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:afb00001]  09140 Cellular Processes   09142 Cell motility    04820 Cytoskeleton in muscle cells     129097677 (col11a2)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:afb00536]     129097677 (col11a2) Glycosaminoglycan binding proteins [BR:afb00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    129097677 (col11a2) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen COLFI Laminin_G_2 Laminin_G_1 Laminin_G_3 Motif Other DBs NCBI-GeneID:  129097677 NCBI-ProteinID:  XP_054462562 LinkDB All DBs Position 10:complement(13817388..13854825) Genome browser AA seq 1776 aa AA seqDB search MTVFFSSSDPVDVLRALQVPSLPEGVKKVPGFCASRRSGSPDHAYRITKKAQISAPTKQL FSGRFPENFSIMALVKAQAGLQAFLLSIYSEQGIQQLGIEMGRSPVFLYEDQNGKPAPED YPLFKGVNLADGKWHRIAISVSKKNVTLLLDCKKKMTRALPRGNSAEVDTNGITVFGARL LDEEVFQGDIQQLLIASNPQAAYDFCEHYSPDCDSPLPKTQAQDPNTYYFDEELDDHEYP YYYEETTGVPSSSASPSPQPGALSQQDVDTEYSEAGHTPTETDYYYEETVPEGEVIGQEE NAPQVETMLVGEEVDATKTGGVGEEAFTEEYVTGDVGLKEYDYSYRDYNEPILETREVDA YMGPALSAVTDEGGAAVRGQKGEKGDPAVLEPGMLIEGPPGPEGPAGPTGPPGSSGPPGS AGDPGERGFPGKAGLSGADGIPGPPGTSVMLPFRFGQSGGDKGPSVSAQEAQAAAILSQA RMALKGPPGPMGFTGRPGPLGNPGSNGLKGESGDPGPQGSRGPQGMMGPLGKSGRRGRAG ADGARGMPGESGTKGDRGFDGLPGLPGDKGHRGDSGPLGPPGSQGEDGERGDDGEVGPRG LPGEPGPRGLLGPKGPPGISGPPGVRGNDGPHGPKGNLGPQGEPGPPGQQGTPGTQGMAG PQGALGPPGEKGPTGKPGLPGMPGADGPPGHPGKEGPSGTKGNQGPNGPQGSIGYPGPRG VKGGQGIRGLKGHKGEKGEDGFPGIKGDFGAKGERGELGVSGPRGEDGPEGPKGRVGPPG EIGPLGLVGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGSNGEKGTRGLGGKSGPRGQRG PTGPRGQRGPRGTTGKPGAKGTSGSDGPSGPSGERGLPGPQGANGFPGPKGPPGPPGKDG LPGHPGQRGEVGFQGKMGPPGPPGVVGPQGPSGETGPMGERGHPGPPGPPGEQGLSGPSG KEGTKGDPGPSGGPGKDGPPGLRGFPGERGLPGTPGGGGLKGSEGPAGPPGPAGSPGERG QAGTAGPVGPPGRPGPQGPPGPSGEKGVPGEKGPIGPAGRDGVQGPVGLPGPAGSPGVPG EDGDKGEVGEHGQKGAKGGKGEHGPPGPPGPMGPVGQPGPAGADGELGPRGQQGPFGAKG DEGTRGFPGAPGPIGLQGLPGPPGEKGETGDVGPLGPPGPPGPRGPAGPSGADGPQGPPG GLGNPGLIGEKGEPGEGGPPGIVGEPGKKGPRGERGEKGESGQPGTAGPAGGRGGPGDDG PKGNPGPVGFPGDPGSPGEVGPRGQDGAKGERGEDGEQGESGSPGPPGENGPPGPLGKRG PAGTKGPEGRQGEKGTKGDSGAVGPPGKTGPVGPQGQPGKPGTEGLRGLPGSVGEQGSPG LAGQKGPPGPIGPPGLPGLRGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSSG SKGESGMSGGTGPIGPAGPPGLPGPQGVKGAKGSSGGSGPKGEKGVQGPAGPPGPPGEVI QPLPIQRSPKSKRSIDASMLLPDTGSDMPASDATGTEFLMGSEGMEEIFGSLNSLRQEIE TMRFPLGTQDSPARTCQDLHLSKPELKDGEYWIDPNQGCSRDSFKVFCNFTSGAETCLYP SQSINTVKMSSWDNETPGSWYSQFATGSKFSYVDSTGEPVGVVQLGFLRLLSVQARQNLT YHCHRSVAWADRSAKNNYNRALHLQGANDEKLSYETNPYIKALVDGCSYRKGFDRTVLEI NTPQVEHLPLLDIKVSDFGESNQQFGFEVGPVCFQG NT seq 5331 nt NT seq  +upstreamnt  +downstreamnt atgacagttttcttctcttcctcagacccagtggatgtgttgagggctctgcaggttccc tctctccccgagggcgtgaagaaagtccccggcttctgcgcatcccgtcgctccggcagc cccgaccatgcttaccgcatcaccaagaaggcccagatctctgcccccaccaagcagctc ttctcaggtcggttcccggagaacttctccatcatggctctggttaaggcccaggctggt ctccaggccttcctcctctccatctacagcgagcagggcatccagcagctgggcattgaa atgggacgctccccagttttcctgtacgaggaccagaacggcaagccggcccctgaggac tacccactgttcaaaggcgtcaacctggctgatggcaagtggcatcgcatcgctatctct gtttcaaagaaaaatgtgactctgctgctggactgcaagaagaagatgacccgcgccttg ccccgcggcaacagcgcagaggtcgacaccaatggcatcacggtgttcggagcccgtctg cttgatgaggaggtcttccagggagacatccagcaactgttgatcgcctccaacccccag gctgcctatgacttctgtgaacactacagccctgactgtgactccccactgcctaagacc caggctcaggaccccaacacatactactttgatgaggagctggatgaccatgaatacccc tattattatgaggaaacgacaggcgttccctcctcctctgcgtccccctctccccaacct ggggccctcagtcaacaggatgtagacactgaatattccgaggctggccacacccctaca gagactgattattactatgaggagacggtgccagagggtgaggtgattggacaagaagag aacgctccccaggtggagacaatgttggtgggagaggaggtagatgccaccaagacaggc ggtgtgggcgaggaggccttcactgaggagtatgtgactggggacgtgggccttaaggaa tacgactattcctacagggactacaatgagccaatactggagaccagagaggtcgatgcc tacatgggccccgccctgtccgctgtgacagacgagggaggcgctgccgtcagaggccag aaaggagagaaaggagaccctgctgtcttggagcctggtatgctgattgaaggacctcca ggacctgagggacctgctggtcctactggcccccccggctcctctggacctcctggctct gccggtgaccctggcgagaggggttttcctggtaaggctggtctgtctggagctgatgga atcccaggacctcctggaacctcagtcatgctacctttccgtttcggtcagagtggagga gataagggtccttctgtttctgcccaggaagcccaggcagcagccatcttgtctcaggcc aggatggctctgaaaggacctcctggaccaatgggattcactgggcgccccgggcccctg ggaaatccaggtagtaatggtctgaagggagagagtggagaccctggtcctcagggctcc aggggaccccagggtatgatgggtcctcttggcaaatcaggaagaagaggccgtgctgga gctgatggcgcaaggggaatgccaggagagtctggaactaagggtgaccgtggttttgat ggccttcctggtttgcccggtgacaaaggacacagaggtgactcaggaccgttgggaccc ccaggatctcaaggcgaggacggagagaggggagatgacggagaagttggacccaggggt ctcccaggtgaaccaggacctcgcggcttgctcggacccaaaggtcctccaggaatctct ggacctcctggtgtacgagggaatgacgggcctcacggtcccaagggaaacctgggtccc caaggagaaccaggtcctccaggtcagcagggaaccccaggaactcagggtatggcagga cctcagggagccctcggacccccaggagagaaaggtccaacaggaaaaccaggtctgcca ggaatgcctggagccgacggcccgccaggtcatccaggaaaggagggcccttctggcacc aaaggaaaccagggtcccaacggtccccagggttctatcggctatcctggccctcgtggt gtcaagggaggtcaaggaatccgtggactgaagggccacaagggagagaagggagaagat ggtttccctggaattaagggagattttggtgccaagggagagaggggtgagcttggagta tcagggcctagaggagaggatggtccagaggggccaaagggtcgcgtcggaccgcctggt gaaattggaccacttggactggttggagagaagggaaaacttggtgtacctggacttcct ggatatcccggaagacaaggacccaagggatctcttggattccctggtttccccggctca aacggcgagaagggaacgaggggtcttggtggcaaatcgggaccaagaggacaaagagga ccaacgggccccagagggcagagaggaccgaggggcacgactggaaaacctggagcaaag ggaacttcggggagtgatggcccttctggtccgtctggagagaggggattgcccggacct cagggagccaatggtttccccggaccaaagggacctcctggaccaccaggaaaggacggg cttcccggacaccctggacagagaggagaagttggtttccaaggtaaaatgggtccacct ggacctcctggagtcgttggtcctcagggtccatcaggagagactggcccaatgggcgag cgtggccaccccggacccccaggtccacctggagagcagggactttctggtccctcaggg aaggaggggaccaagggagaccctggaccctccggaggccccggcaaagacgggccccca ggactgagaggcttccctggtgagagaggacttcctggaacccctggaggtggaggactg aaaggaagtgaaggacctgccggacctcctggacccgctgggtctcctggtgagaggggg caagctggtactgctggacctgttggacctcctggcagaccaggccctcaggggcctcct ggaccatctggagagaagggagttcctggtgagaaaggtcctatcggcccggccggacgt gatggagtgcagggtccagtgggtctgcctggccctgccggatcacccggagtacctgga gaggacggagacaagggtgaggtcggagaacatgggcagaagggcgcaaagggaggaaaa ggagagcatggtcctcctggtccacccgggccaatgggtcctgtcggtcagcctggtcct gccggtgctgatggagagcttggaccaaggggccagcaggggccatttggagctaaaggt gacgaaggaaccagaggattcccaggagccccaggacccatcggactgcagggattgcca ggaccaccaggtgagaagggagagacaggagatgtcggacctctgggtcctccaggtccc ccaggaccccgtggcccagctggacccagcggtgctgacggtcctcaaggtcctcctggt ggtttgggtaatcctggacttattggagagaagggagagcctggtgagggaggaccacct ggaatcgtaggggagccagggaagaagggtcctcgtggagaacgcggagagaagggagaa tccggacaacctggaactgctggacctgctggaggacgaggaggacctggagatgatgga cccaaaggaaaccctggtcctgttggtttccctggtgatcccggttcccctggtgaggtt ggacccagaggtcaagatggtgccaagggagagagaggagaagatggtgaacaaggagaa tctggctcccctggacctcctggtgagaatggacctcccggccccctaggaaagaggggc cctgctggaacaaaaggaccagagggacgtcagggagagaaggggactaagggagactcg ggtgctgtcggccccccaggaaagaccggacccgtcggcccccagggtcaaccaggaaaa ccaggaacagaaggcctcagaggactgccgggatcagtgggtgagcaaggatctccagga cttgccggacagaaaggaccacctggaccaattggacctcctggtttgcctggtttgcgt ggagaccccggatctaagggagagaagggacacccgggacttatcggtctcattggaccc ccaggagagcagggagaaaagggagacagaggtttgcctgggcctcagggatcctctgga tcaaaaggagagtctggaatgtctggaggaaccggacccatcggccctgctggtcctcct ggtctgcctggtcctcaaggtgtcaagggagctaagggatcttctggtggatctggtcca aagggagaaaaaggtgtacaaggacctgctggacctcctggcccaccaggcgaggtcatt cagcccctgcccatccagaggagtcccaagtccaagcgttccatcgacgccagcatgctg ctccccgacaccggctccgacatgcccgcatctgatgccactggcactgagttcctgatg ggcagcgaaggcatggaagagatcttcggctctctcaactcactgcgacaggagatcgag accatgcgtttccctcttggcacccaggacagccctgcccgcacctgccaggacctgcac ctcagcaagccggagctcaaagacggagagtactggattgatcctaaccagggctgctcc agagactccttcaaggtgttctgtaatttcaccagcggagcagaaacctgcctgtacccc agccagagcatcaacacggtgaagatgagttcctgggacaacgagactccaggatcctgg tacagtcagttcgccactggtagtaagttctcctatgtggactctaccggtgagcctgtg ggcgtggtccagctgggcttcctgcgtctcctcagcgtccaggcccgccagaacctcacc taccactgccaccgctcagtggcctgggccgaccggagcgccaagaacaactacaacagg gcgctgcacctccagggggccaacgacgagaagctgagctacgagaccaacccttacatc aaggccttggtcgatggctgctcttatcgtaagggctttgacaggaccgtcctggagatc aacacaccacaggtggagcatcttcctctgctggatatcaaggtgtcagactttggggag agcaaccagcagtttggctttgaagtgggacctgtctgtttccaaggctaa

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