Anoplopoma fimbria (sablefish): 129098107
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Entry
129098107 CDS
T09102
Symbol
mgrn1b
Name
(RefSeq) E3 ubiquitin-protein ligase MGRN1b isoform X1
KO
K10604
E3 ubiquitin-protein ligase MGRN1 [EC:
2.3.2.27
]
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb04120
Ubiquitin mediated proteolysis
afb04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
129098107 (mgrn1b)
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
129098107 (mgrn1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
afb04121
]
129098107 (mgrn1b)
Enzymes [BR:
afb01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
129098107 (mgrn1b)
Ubiquitin system [BR:
afb04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
129098107 (mgrn1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4_3
zf-RING_2
Prok-RING_4
zf-C3HC4
zf-C3HC4_2
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
129098107
NCBI-ProteinID:
XP_054463053
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All DBs
Position
11:complement(4009812..4019117)
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AA seq
549 aa
AA seq
DB search
MGSILSRRIAGVEDIDIQANSAYRFPPKSGNYFASHFFMGGEKFDTPHPEGYLFGENMDL
NFLGNRPVQFPYVTPAPHEPVKTLRSLVNIRKDSLRLVRYKDDSDATVEEGGKPKVQYGV
EFTFDADARVAITLYCQAFEEFSNGMAVYSPKNPSLVSETVHYKRGVSQQFSMPSFKIDF
TEWKEEDLNFDLDRGVFPMVIQAVVDEGDDCLGHAHVLLAAFERHVDGSFSVKPLKQKQI
VDRVSYLLQEIYGIENKNNQETKPSDDENSDNSNECVVCLSDLRDTLILPCRHLCLCNSC
ADTLRYQANNCPICRLPFRALLQIRAVRKKPGALSPVSFSPVLAQTMDHDEHSSTDSVPP
GFEPISLLEALNGLQSVSPAIPSAPLYDEINFSGVPGGDSRQLSSPEHLSDGSLQKSKVS
KSPDSTLRSPSSPIQEEDEEKLSEMSDAQPHTLLSSSPAPTDATATEDVAESLSPDDEDR
MQAGEDILQDCSSEHSSLTKTESDPPGDLSLPGSSESTESLKSQSTNCSSQPLLCPTSSL
HMEDDHLNP
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atgggctccatcctgagtcgcaggattgctggtgtcgaggatatcgatatccaggccaac
tctgcttatcgattccctcccaaatcagggaattattttgcgagccacttctttatggga
ggagagaaatttgacacaccccatccagagggatacctctttggagaaaacatggacctg
aattttcttggaaataggccagtgcagtttccatatgtgacgcctgcaccccacgagcct
gtgaaaaccctgaggagtctcgtcaacattagaaaggactctctgcgtttggtcaggtat
aaagatgactctgacgccacggtggaggaaggtggaaagccaaaggttcagtatggtgtg
gagttcacctttgatgctgatgctcgggtggccatcaccctctactgccaagcttttgag
gagttctccaatgggatggcagtatacagcccaaagaatccatcactggtgtctgagact
gtgcattacaagcgaggggtgagccaacagttctccatgccatctttcaaaatagatttc
accgagtggaaagaggaagatctgaactttgacctcgaccggggtgtgtttcctatggta
atccaagctgtggttgatgaaggggacgattgcctcggacatgctcacgtacttttggca
gcctttgaaagacacgttgatggtagtttctccgtcaagcctctgaagcagaagcaaatt
gtggaccgtgtgagctacctcctacaggagatctatgggattgagaacaaaaacaaccaa
gaaaccaagccatcagatgatgagaacagtgacaacagcaacgagtgtgtcgtctgtctg
tcggacctgcgagatacactcatcctgccctgcagacatctgtgtctctgcaactcctgt
gcagacaccctgcgttaccaggccaacaactgtccaatctgcaggctgcccttcagagcc
ttgctgcagatcagagctgtgaggaaaaagcctggtgctctttcccccgtgtccttcagc
cccgttctggctcagactatggaccacgacgagcactcaagcacagactcagttcctccc
ggctttgaaccaatctccctgttagaggctctgaatggtctgcagtcagtgtctcctgcc
atcccatcggcccccctctatgatgaaatcaacttctcaggggttcccggcggcgacagc
aggcagcttagctccccagagcatttaagtgatggaagtctgcagaaaagcaaagtcagc
aagtcacctgacagcacccttagatctccatcctcccccatccaggaagaagatgaagag
aagctgtctgagatgtccgatgctcagccacacacacttctgtccagcagccccgccccc
actgacgccacagccacagaggacgtggctgaatctctgtctccggatgatgaggacagg
atgcaagctggagaagacatcctacaggactgcagcagtgaacacagcagcttgaccaaa
acagagagcgacccaccgggcgacttgtctctgccagggtcatctgagtcaacagaaagc
ctgaaaagtcagagcacaaactgctccagccagcctctcctgtgtcccacaagcagcctt
catatggaagatgaccacctcaacccctaa
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