KEGG   Anoplopoma fimbria (sablefish): 129101214
Entry
129101214         CDS       T09102                                 
Name
(RefSeq) ubiquitin-associated protein 2-like isoform X1
  KO
K26545  ubiquitin-associated protein 2
Organism
afb  Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:afb00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:afb04121]
    129101214
   03400 DNA repair and recombination proteins [BR:afb03400]
    129101214
Ubiquitin system [BR:afb04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   Multi subunit type E3 associated proteins
    129101214
DNA repair and recombination proteins [BR:afb03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     129101214
SSDB
Motif
Pfam: UBAP2-Lig GIP1_N UBA_4
Other DBs
NCBI-GeneID: 129101214
NCBI-ProteinID: XP_054466883
LinkDB
Position
13:4945382..4962040
AA seq 1171 aa
MMTSVVSNQARGTRDGGLSTTTQTAQPPKQIQATAEQIRLAQMIYDKNDADFEDKVKQLI
EVTGKTQDECMVALHDCNEDVNRAINFLLESTSDTTSWETVGKKRSLGKEGGPSEIKESR
EKKGEREPSRGRGASNRRGRGISRGREGRLEENGFEVAPGERGGDRGRRGRGRGAGVRGR
GRAAAGNRFSTQGMGTFNPADYTANSRGRQNTWDGNETAEGTETWEGNVEDWAAEDWNED
LSETKVFTASSPPTNHITPGANVDLSSILPKSGVAVGGSMESDLGAIVDGPSAEHLGQGL
VFTNSHHNGRTATHSYAHATANSYAHAASASTTYAHAALSSVLGSGFGSLNAPKPTPASD
IRTTEQLNGPRLGQRASQMLANGSNINVSKDAGPPPIQNSVPACSPSLEGKAQRVENGPV
TAQHMEMKHQPEPSAVLSQLAQRQQQSSILPTTDPLGLSHAPQVPTPPGHESSVPPLRDG
ASPGGKFSCMEPSVTEPPPRQLKTQRRRVPPSSKIPSSAVEMPGSADIPGLNVQFGALDF
GSEAASGTVMAQTEAAREQAPTQGQAQAAPVPMSVPTAVTTQQSQSSLFSKPGSVSEHMS
SLPTLPLTVSDPSFPSPSLGLPSATPSPSMGLPSAAAPPSSTAPSAASRVESSGQRSLPP
HLGFSQTKDVSSAAALTNGYSGMKTQSTQDATSSMSRTVKNESPIMTSDSGHHIPSPAVT
PSHSTSIPSLSSHVTNTYSTGSALATSSSHTISNVENNSSGNLHAYSSSSSIQAVDSSPS
APMVSSSITNGLHLSGAPGLTPNGTNATLSAAGSRQAPLLTATSGKAPPNLAQGVPPLLA
NQYIMGPGGLLPAYPQIYGYEDLQMLQSRLPMDYYGVTFPGTTAAMPGRESLANNPYSGE
ATKFGRNDSASPAPPTSMSTAGVQSQPQQAPQGGTQGQGQQTQNQAFLNPPLPPGYGYTG
LPYYAGMPGVPSAFQYGPTVFVPPTSAKQPGMGLANPSNQYHQQHQPSYGQHAYGTAFDD
LSQAHGGEYSKGGYGGSAQSQAKSAGSGPGKAPGLSGSGTSGGVPDMGGSIYSKTQSFDK
QGFHTGTPPPFSLPSALGGTGPLNPGGAPGYAPAPFLHILPPHQQPHSQLLHHHLTQDGQ
GGPGQRNQSSSMQQKTQGSKSSYGSSPYWAN
NT seq 3516 nt   +upstreamnt  +downstreamnt
atgatgacttcagtggtcagcaatcaagcccgggggactcgggacggagggctgtccacg
accacacaaacagcacagccaccgaaacagatacaggccacagcagaacagattcgttta
gcccaaatgatctacgacaaaaatgatgctgactttgaagacaaagttaaacagctgatt
gaggtaactgggaaaactcaagatgaatgcatggtagccctccatgactgcaacgaagat
gtgaacagagccatcaatttcctgctggagagcacttctgacacaacctcctgggagact
gtggggaagaagcgtagccttgggaaagaaggaggaccctcagagataaaggaaagcagg
gagaagaaaggagagagggagcctagtcgcggacgtggggcgtccaacaggaggggcaga
ggcatcagccgagggcgcgaaggtcggttagaggagaatgggtttgaggtggctcctgga
gagagggggggtgaccgtggacgcagagggcgaggcagaggggcaggggttcgcggtaga
ggaagggcagctgctggcaacaggttctctacccagggaatgggcaccttcaatcctgct
gactacacagctaactcccgaggtcgccagaatacatgggacggcaatgaaactgctgag
ggaactgaaacatgggaaggcaatgtggaagactgggctgcagaggactggaatgaggac
ttgtctgagaccaaagtattcactgcctcctctcctccaacaaaccacatcacacctgga
gccaatgtggacctgtctagcatactgccgaagtctggagtcgctgtagggggttctatg
gagtctgacttgggagcaatagtcgatggcccctcagctgagcatttgggccaaggcctg
gtgtttaccaattcccaccacaatggacggactgcaacacacagctacgcacacgccaca
gccaacagctacgcccacgccgcctctgctagtaccacctatgcacatgctgcactgtcc
tcagtcttgggttctggttttgggtccctgaatgcgcctaagccaacgcctgcctctgat
atcaggacaacggagcagctcaacggccctcggcttggtcagagggccagtcagatgttg
gccaacggcagtaacattaatgtttccaaagatgcagggccacctccaatacagaactct
gttcctgcgtgctctccctctctcgaaggcaaggctcagagagtggagaacggccctgtt
actgcccaacacatggagatgaagcatcaacctgagccatcagcagtgctcagccagctg
gctcagaggcaacaacagtcctccatcctccccaccacagatcctctgggcctgtcgcat
gctccacaggtccccacaccaccaggtcatgagtcctccgtccctcctttaagagatgga
gcttctccaggcgggaagttttcatgcatggagccttcagtcacagaacccccaccacgg
cagcttaagacacagagacgcagagtacctccttcctcaaagatcccgtcgtcagcagtg
gagatgccaggctctgcagatatacctggcctgaatgttcagtttggggctcttgacttt
gggtctgaggctgctagtggaacagtcatggcacagactgaggcggccagggaacaagca
ccgactcagggccaagctcaagcagctccagtacccatgtctgttcctactgctgttact
acacagcagtcacagagcagcctgttctccaagccaggatctgtgagcgaacacatgagc
agtttacccaccttaccattaaccgtatcggatcccagcttcccttcaccatccttgggc
ttacctagtgccacaccctccccctccatggggcttcccagtgcagcagcaccaccctct
tctacagccccttctgccgccagccgtgtggagagcagtggtcaaagatccctgccacct
catctgggcttctctcagaccaaagatgtctcctcagctgccgctctcacgaacggctac
agtggcatgaagacacagagcacacaagatgctacatcatcaatgtctagaacagtcaaa
aatgagtctcccattatgacgagtgacagtggccaccacatcccctcccctgcagttaca
ccttcccactcaacatccatcccctcgctcagcagtcatgtgaccaatacttactcaacg
ggatccgctcttgccacaagctcctcccacacgataagtaatgtggagaacaatagtagt
ggcaacctccatgcctattcatcatcgtcgtccatccaagctgtcgattcaagtccttca
gctcccatggtcagcagctcaatcaccaatggtctgcacctatctggagcacctggacta
actcctaatggcacaaacgccacactctcagctgcaggcagccgccaggcacccctgctc
accgccacctctggtaaagctcctcccaacttggcccaaggagtgccacctctcctggcc
aaccagtacatcatgggtcctggtggattgctccctgcttacccgcagatctacggatac
gaggatttgcagatgctgcagtctcgccttcctatggattattatggtgtaacattccct
ggtactacagcagctatgcctggaagagagagcctggctaacaatccatattctggtgaa
gcgacaaagtttggcaggaatgattcggcatctccagctcccccaaccagcatgtctaca
gccggggtgcagtcacagccccagcaggcaccacagggaggaacacagggccagggtcag
caaacacagaaccaggccttcctcaatccccctctgccccctggctacggatacacaggt
ctgccatactacgctggtatgccgggggttccctcagctttccagtacggccccaccgtc
ttcgtgcctcctacttcggccaagcaacctggaatgggcctggccaacccttccaatcag
tatcaccaacagcatcagcccagttacggacagcatgcatatggcacagcctttgatgac
ctgtctcaagcccacggtggggagtacagtaagggagggtacggaggctctgcccagtca
caggccaagtcagcgggcagcggcccagggaaagcaccaggactgtcagggtcaggtacc
agtggaggagtacccgacatgggaggctcaatctacagcaaaactcaatcctttgataag
cagggcttccacacagggacaccgcctcccttcagcctgccttcagctctggggggaaca
gggcccctgaaccctggaggtgctcctggctatgctcctgctcccttcctgcacatcctg
ccaccacaccaacagccccactctcagctgctgcaccatcacctcacacaggatggacag
ggtggtcctggtcagcgcaatcagtccagcagcatgcagcagaagacccaaggcagcaag
tccagctatggcagctccccctactgggccaactga

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