Anoplopoma fimbria (sablefish): 129110832
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Entry
129110832 CDS
T09102
Name
(RefSeq) collagen alpha-1(XVIII) chain-like isoform X1
Organism
afb
Anoplopoma fimbria (sablefish)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
129110832
NCBI-ProteinID:
XP_054479036
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All DBs
Position
21:4068784..4130194
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AA seq
1348 aa
AA seq
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MKMTSRIPPWFFGLLLLALRFCCSSPQLLDDRGSMSALDLTELIGVPLPPSVSFVTGFEG
YPAYSFGPDANVGRLTKSFIPDPFYHDFAITVTAKPTTRRGGVLFAITDAYQKIVHLGVA
LSEVEDGSQRVILYYTDPGTSGGTQEAASFKMGDLTGRWARFTLTVQGAEVRLYMDCEEY
HRVAFTRSPQPLTFEASSGIFVGNAGGTGLDRFVGSIQQLVLKSDPTAPDDQCEEDDPYA
SGYGSGDDAYEDIEGRDEVKKIVEERDYPMPLPELDPTYSTPAPAPSTPMSPGDDDDDYY
DYDEDTEETSGQEVEVTTVGVKSFQTSAPASVLDTPLPELDPTYSTPAPAPSTPMSPGDD
DDEYYDYDEDTEKTSGQEVEMTTVGVKSFQTSAPASVLDTPLPELDYYDYDEDTEKTSGQ
EVEVTTVGVKSFQTSAPASVLDTPLQVSPGQKGERGEPGPSGPPGPPGPPGQASGDGEGG
EPGPRGPQGPQGPSGPPGFSGKDGQPGSKGETGVPGATGIPGFPGLQGETGLMGEKGDPG
VGLPGPPGPPGPPGKPSKSSMFLEGSGFDDFDNDAEIIRGPPGPPGVPGQPGPPGTPSED
FFPGPPGAPGKDGKDGENGEPGVDGKDGDPGAAGEKGDKGETGVSGQPGAKGDQGPAGFP
GIPGSEGPEGHPGPRGPSGPPGPPGPPGRGFTMDFEDLEGSGMQSGYGAPLSRGPQGPPG
IPGLEGPKGKDGSPGNPGQKGETGATGRSGFPGLEGLKGQEGPKGNKGDPGQKGETGRDG
LSLPGPPGPAGPAGPIINLQDLLLNDTDGAFNFSGIFEAGPQGPKGDSGLPGVQGPPGLK
GERGEPGFAIAADGYMMSDLAGPKGFKGDNGVAGPAGITGPTGPPGPKGEFGFPGRPGRP
GLKGPKGETGDSASVPGPPGPPGLPGRPGIFNCPKGTVFPIPPRPHCKMALNPNGTISFG
NCQTAPKGEKGERGLPGIPAPPNSFIPRGVWGARGDQGTKGEKGDKGEAAWPGQPGIPGR
PGPVGPKGDSVVGPPGHPGVPGSPGYGRPGPVGPPGPPGPPGPSGSALRYGSALTVAGPP
GPPGPAGPPGPTNKAASLKTFASRESMMQHTVRDAEGTLAYVTATGSLFLKVSQGWKEIQ
LGSLIYLSNNIIPQDEPQVSYQIRGDTMERIRSVSERLNLVALNQPHSGDMMGLDTADRM
CYEQAKAMGLAPNYRAFISSHRQDLVHVVYPSLRETLPVTNLRGDVMFRNWRTIFNGDGG
PMDARIPIYSFDGRDVLADPFWPLKSIWHGSTSRGLRVVDKHCETWQADHMSVMGQSSSL
TSGLLLGQQTRSCSNQYIVLCIETHKNL
NT seq
4047 nt
NT seq
+upstream
nt +downstream
nt
atgaagatgacttcacgcattcccccctggttctttggattacttctactcgcgctccgg
ttctgctgctcctctcctcagctgttggatgaccgtggttctatgtcagccttggacctg
acggagctgatcggcgtcccccttcctccctccgtctcctttgttacgggtttcgagggt
taccccgcctacagcttcggcccggacgccaacgtgggccgcctcacaaagtcattcatc
cccgacccgttctatcatgacttcgccatcacggtcacagctaaacctaccacgcggcgg
ggtggtgtgctgttcgccatcacagatgcttaccaaaagattgtacacttaggtgtagcg
ttgtccgaggtggaggatggttcccagagagtcatattgtactacaccgacccaggaaca
agtggtggaacccaggaagcagcttccttcaaaatgggagacctgacgggaagatgggcg
aggttcaccctgactgtgcagggggcagaggtgcgtctctacatggactgtgaggaatac
caccgcgtggccttcaccaggagccctcagcctctgaccttcgaggccagctcggggatc
ttcgtggggaacgctgggggtacgggcctggaccggtttgtgggctccatccaacagctg
gtgttgaagtcggatcccacggccccagatgaccagtgtgaggaggacgatccttatgcc
tctggatatggaagcggtgatgatgcgtatgaagacattgagggaagagacgaagtgaag
aagattgtggaggagagagactaccccatgcccctcccagagctggaccccacctacagc
accccagcccctgctccgtccactccgatgtcgccaggcgatgatgatgatgattattat
gattatgatgaagacacagaggagacttctggacaggaagtggaggtgaccacagtagga
gtgaaatcatttcagacgagtgctccagcctctgtattagacactcccctcccagagctg
gaccccacctacagcaccccagcccctgctccgtccactccgatgtcgccaggcgatgat
gatgatgagtattatgattatgatgaagacacagagaagacttctggacaggaagtggag
atgaccacagtaggagtgaaatcatttcagacgagtgctccagcctctgtattagacact
cccctcccagagctggattattatgattatgatgaagacacagagaagacttctggacag
gaagtggaggtgaccacagtaggagtgaaatcatttcagacgagtgctccagcctctgta
ttagacactcccctccaggtgtctccaggacagaaaggggagcgaggtgagccaggtcca
tccggtcctccaggaccgcccggccctccaggacaagcctcaggagacggggagggaggg
gagccaggaccccggggtccacaaggaccacagggaccttcaggtccacctgggttttct
gggaaggatggacagcctggaagcaaaggtgaaactggtgtcccaggagcaactgggatt
ccaggattcccgggactacagggagagactggtcttatgggagaaaagggtgatcctggt
gttggactaccaggtccaccaggccctcctggacctccaggtaaaccaagcaagtcgtcc
atgttcctggaggggtcaggatttgatgactttgacaatgatgcagagattatcaggggg
cctccagggcctcctggcgtcccgggacagccagggcccccaggaaccccatcggaagac
ttctttcctggaccacctggggcccctgggaaagatgggaaggatggagagaacggtgaa
cctggagttgatggaaaagatggagatccaggagctgctggggagaaaggagacaaggga
gaaactggtgtaagcgggcaaccgggagcgaagggagatcagggccctgcagggtttcca
ggcataccaggctccgagggtccagaagggcatcctggtcccaggggtccatctggccct
cctggtcccccaggtcctcctgggagaggcttcaccatggactttgaggacttggaagga
tctgggatgcagagtggttacggagctccgctctccagaggcccacagggacctccagga
atccctggacttgaagggcccaagggaaaagatggctccccaggaaacccagggcaaaag
ggggagacaggtgctacaggacgatcagggtttccaggactggagggactaaaagggcaa
gagggaccaaaggggaacaaaggagacccaggacaaaagggagagacgggacgggatggc
ctcagtctacccggccctccaggaccagctggaccagcaggacccattatcaacctccag
gatcttctactgaacgacacagatggtgccttcaacttctcagggatttttgaagccggg
ccacagggtccaaagggagacagtgggttgccgggagttcaaggacctccaggactgaaa
ggtgaaaggggtgagccaggatttgccatcgcagcagatggatacatgatgtcagaccta
gctggacccaaaggatttaagggagataatggtgtagccggacctgctggaattacaggg
cctaccggaccaccaggacccaaaggagaattcggttttcctggaagacctggacgccca
ggcctgaagggaccaaagggagagacaggagactctgcaagcgtgccgggacctcctggc
ccccctgggctgccgggccgtccaggaatattcaactgcccgaaaggaaccgtgttcccc
atcccgcccagaccccactgcaaaatggctcttaatcccaatggaaccatttcatttggt
aactgtcagacggcaccgaaaggggagaagggagagcgaggtcttcctggtatcccagcg
cctccaaactcttttattcccaggggagtctggggggcaagaggtgaccagggcactaaa
ggagagaagggggacaagggggaggcagcgtggcccgggcaaccaggtatccccgggaga
ccaggaccggtgggacccaaaggggattcagtggttggtccaccgggccaccctggggtg
ccgggttcaccaggttatggcagaccaggaccggtcggccctcctgggccaccggggcct
ccaggaccctctgggtcagccttgagatatggctcagctttgaccgttgccggcccgcct
ggacctcctggaccagctggacctcctggacctacgaataaagcagcatctctgaaaaca
tttgcttcccgtgagagtatgatgcagcacaccgtcagggatgcagaaggaactctggcg
tacgtcacagcaacaggaagtctcttcctcaaggtctcccagggatggaaagagatacag
ctcggcagtctgatctacctttccaataacattatcccacaagatgagcctcaggtttca
tatcagataagaggagacacgatggaaagaatacgctcagtcagcgaaaggctcaacctg
gtggcgttgaaccagccccactcaggcgacatgatggggctcgacacagccgaccggatg
tgttacgagcaagccaaggcgatgggtttggctccaaactaccgcgccttcatttcttcc
cacaggcaagacctggtccatgtggtttatcccagtctcagagaaactctgccagttacc
aacctgaggggggatgtgatgtttaggaactggcggacaattttcaatggcgatgggggg
ccaatggatgccaggataccaatctactcctttgacggccgggatgttttagctgacccc
ttctggcctctgaagagtatctggcacggctccaccagcaggggtctccgagtggtggac
aaacactgcgagacgtggcaagcggaccacatgtctgtcatgggccagtcatccagcctg
acctcaggtctgctcctgggccagcagacgaggagctgttccaaccagtacatcgttctt
tgcatcgagacccacaaaaacctttaa
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