Alistipes finegoldii: Alfi_1254
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Entry
Alfi_1254 CDS
T02133
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
afd
Alistipes finegoldii
Pathway
afd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Alfi_1254
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afd03019
]
Alfi_1254
03016 Transfer RNA biogenesis [BR:
afd03016
]
Alfi_1254
Enzymes [BR:
afd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Alfi_1254
Messenger RNA biogenesis [BR:
afd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Alfi_1254
Transfer RNA biogenesis [BR:
afd03016
]
Prokaryotic type
tRNA degradation factors
Alfi_1254
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
S1_2
RNase_II_C_S1
KH_2
Motif
Other DBs
NCBI-ProteinID:
AFL77602
UniProt:
I3YKT4
LinkDB
All DBs
Position
complement(1376935..1379169)
Genome browser
AA seq
744 aa
AA seq
DB search
MEDKKLYNAVRKIITLADGRQIEIETGKLAKQADGSVVVKQGDTMLLATVVAAKDAKPDT
DFMPLQVEYKEKYASCGRYPGGFMKREGRANDSEILVARLIDRALRPLFPADYHAEVYVT
VNLISADKDIQPDALAGLAASAALAVSDIPFGGPISEVRVARLDGEYVINPKFSEMDRVD
LDIMVGGTIDNILMVEGEMKEVSEEVMLGAIKFAHEEIKKHCAVQIELSKELGKDVKRTY
CHEENDEELRQLIVKELYDKAYAIATSGTMKHEREDMFNALEAEFAARYSEEELAEKAML
IHKYFHDDVQKKAMRNMILDEGLRLDGRKTDEIRPIWCEVDYLPAAHGSAIFTRGETQSL
TSVTLGTKLDEKQKDEVLVQGTEQFVLHYNFPPFSTGEAKAARGLSRREIGHGHLAWRAL
KPMIPLGEENPYAVRVVSDILESNGSSSMATVCAGTLALMDAGVKLKKPVSGIAMGLISD
SQSGKWAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEVLAAALEQARKG
RLHILGKLTECIAEPRADYKPFVPRIVQITIPQDMIGAVIGPGGKVIQDIQKTTGTTITI
TEVDNKGIVDIFGQDKTALDGALNRIKAIVAIPEVGETYHGKIRSIVTFGAFVEIMPGKD
ALLHISEIDYKRFETMEETGLKEGDEIDVKLIGIDPKTNKLKLSRKVLLPKPEGYVERER
RPREDRPDRGERRERRDRPGRKEE
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atggaagacaaaaagctgtacaatgcagtccgcaagatcattacgctggccgacggacgc
cagatcgagatcgaaacgggcaaactggccaagcaggccgacggctcggtggtggtcaag
cagggcgatacgatgctcttggccacggtagtagccgccaaggacgcaaaacccgacacc
gatttcatgccgctccaagtggagtacaaagagaagtacgcttcgtgcggacgctatccc
ggcggcttcatgaagcgcgaaggccgcgccaacgacagtgagattctcgtcgcccgtctg
atcgaccgcgccctgcgtcccctgttccccgcggattaccacgccgaagtttacgtgacg
gtgaacctcatttcggccgacaaggatattcagcccgacgcgctggccggtctggccgct
tcggccgcactggccgtttcggacattccgttcggaggccccatctcggaggtccgcgtt
gcacgtctcgacggagagtacgtcatcaaccccaaattctcggagatggaccgcgtggac
ctcgacatcatggtcggcggtacgatcgacaacatcctgatggtcgaaggcgagatgaaa
gaggtttcggaagaggtgatgctcggagccatcaagttcgcacacgaggagatcaagaag
cactgcgccgtacagatcgagctttcgaaagagctgggcaaggacgtgaaacgcacctac
tgccacgaggagaacgacgaggagctgcgccagctcatcgtcaaggagctttacgacaag
gcctacgccatcgccaccagcggtacgatgaagcacgagcgcgaggatatgttcaacgcc
ctcgaagccgaattcgccgcgcgctattcggaggaggagctggccgagaaagccatgctg
atccacaaatacttccacgacgacgtgcagaagaaggccatgcgcaacatgatcctcgac
gagggcctgcgtctcgacggccgcaagaccgacgagatccgtccgatctggtgcgaggtg
gactacctgcccgccgcccacggttcggcgatcttcacccgcggcgaaacgcagtcgctg
accagcgttacgctcggcacgaaactcgacgaaaagcagaaggacgaagtgctggtgcag
ggcaccgagcagttcgtgctccactataacttcccgcccttctcgacaggcgaggccaag
gccgcacgcggcctgagccgccgcgagatcggccacggccatctggcatggcgcgccctg
aagccgatgattccgctgggcgaggagaacccctatgccgtgcgtgtcgtttcggacatc
ctcgaatcgaacggttcgtcgtcgatggctaccgtctgcgccggtacgctggccctgatg
gacgccggcgtgaagctcaaaaaacccgtgtcgggtatcgccatgggtctgatttccgac
tcccagagcggcaaatgggccgtactgtcggacattctgggcgatgaggaccacctcgga
gacatggacttcaaggtgacgggcaccaaggacggcatcaccgccacccagatggacatc
aaggtggacggcctttcgtacgaagtgctggccgccgcgctggagcaggcccgtaaggga
cgcctgcacatcctcggcaaactcaccgagtgcatcgccgagccgcgcgccgactacaag
cctttcgtgccgcgcatcgttcagatcaccattccgcaggacatgatcggcgccgtgatc
ggccccggcggcaaggtgattcaggacatccagaagactacgggcacgaccatcaccatc
acggaggtggacaacaagggcatcgtggacatcttcggacaggacaagaccgcgctcgac
ggcgcgctgaaccgcatcaaggctatcgttgcgattccggaggtcggcgagacctaccac
ggcaagatccgttcgatcgtcaccttcggcgcattcgtcgagatcatgcccggcaaagac
gccctgctccatatttcggagatcgactacaagcgtttcgaaaccatggaggagaccggc
ctgaaagagggcgacgagatcgacgtgaagctgatcggcatcgaccccaagaccaacaag
ctcaaattgtcgcgcaaggtgctgctgcccaagcccgaaggctatgtggagcgcgagcgt
cgtccccgcgaagaccgtcccgaccgcggcgaacgccgcgagcgccgcgaccgtcccgga
cgcaaagaggagtaa
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