Archaeoglobus fulgidus DSM 8774: AFULGI_00019760
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Entry
AFULGI_00019760 CDS
T03231
Name
(GenBank) DNA polymerase LigD, ligase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
afg
Archaeoglobus fulgidus DSM 8774
Pathway
afg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
afg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AFULGI_00019760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
afg03400
]
AFULGI_00019760
Enzymes [BR:
afg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AFULGI_00019760
DNA repair and recombination proteins [BR:
afg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AFULGI_00019760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
DNA_ligase_OB_2
DNA_ligase_C
Motif
Other DBs
NCBI-ProteinID:
AIG98726
UniProt:
A0A075WFF9
LinkDB
All DBs
Position
complement(1704527..1705438)
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AA seq
303 aa
AA seq
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MLAVRSKPFSSDDHIYEVKWDGTRCLAFVDVEGKRVRLQNRRLLDITYRYPEIKLLDAVE
RNAILDGEVVVIKDGKPSFPLLQKREHVDSRFKIEILSKTIPAVYIVFDVLYCDGWVVDL
ELMERKKILSEVLQSRGRVVVEEWIEGKGEEFYRKAVEMGLEGIVAKKKDGRYLIGKRSR
LWKKIKKRNTLDCVIVGWIEGEGERAKTFGSLVLAVYEDGRLKHVGNVGTGFDSEFLNWF
SERLREIEVAKPHFEIETKNVHWVKPRYVCEVEFLEFTEDGKLRAPVFLRLREDKSPDEC
RID
NT seq
912 nt
NT seq
+upstream
nt +downstream
nt
atgcttgctgtcaggtcaaagcccttcagcagcgacgaccacatttacgaggttaagtgg
gatggaacgaggtgcctcgctttcgttgatgtggagggaaagagggtcaggctgcagaac
agaaggctactggacataacctaccgctaccccgagattaaactgctggatgctgtcgag
agaaacgcgattctcgacggtgaggttgttgtgataaaggacggtaagccctccttccct
cttctgcagaaaagagagcatgtggacagcagattcaagattgagattctcagcaaaacc
attcccgcagtttacatagttttcgacgttctttactgcgacggctgggttgtggatttg
gagctgatggagaggaagaagatactctccgaagttctccaaagcaggggaagggttgtg
gtggaggagtggattgaaggtaaaggggaggagttctacagaaaagcggtggaaatgggg
cttgaagggattgtagcaaagaaaaaggatggaagatacttgataggcaaaaggagcaga
ctctggaagaagataaagaagaggaacacactggactgcgttatagtgggatggattgag
ggagagggagagagggcaaagacctttggctccctcgttctggctgtttacgaggatgga
aggcttaaacatgtcggcaacgttggtaccggctttgattctgagtttctgaactggttc
tcggagaggttgagggaaatagaggttgcaaagccgcacttcgaaatcgagaccaaaaac
gttcactgggttaagccgagatacgtctgcgaggtggagttcctcgagttcaccgaagac
gggaagctcagagcaccggtgtttctgagactgagagaggacaaaagtcccgatgaatgc
aggattgattaa
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