Acidithiobacillus ferrivorans: Acife_0975
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Entry
Acife_0975 CDS
T01595
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
afi
Acidithiobacillus ferrivorans
Pathway
afi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Acife_0975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afi03019
]
Acife_0975
03009 Ribosome biogenesis [BR:
afi03009
]
Acife_0975
Enzymes [BR:
afi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Acife_0975
Messenger RNA biogenesis [BR:
afi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Acife_0975
Ribosome biogenesis [BR:
afi03009
]
Prokaryotic type
rRNA helicases
Acife_0975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AEM47145
UniProt:
G0JNB5
LinkDB
All DBs
Position
999844..1001682
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AA seq
612 aa
AA seq
DB search
MSQESDLRFIDFALAEPIQKAVTEIGYEQPSPIQAQSIPPLLEGRDVIGLAQTGTGKTAA
FALPLLSRVDLSLRVPQLLVLAPTRELAIQVAEAMQSYAKFLPGFHVLPIYGGQSMSLQL
KQLQRGVQVVVGTPGRIQDHLRRKTLRLDQLQAVVLDEADEMLRMGFIDAVEDILKHTPD
GRQVALFSATMPDAIRRIAKTYLRDPLEIRIKSATTTVAAIRQRYWQVSGTHKLDALTRI
LEVEESNAWLVFVRTKTATVELAERLEARGYACGALNGDLSQALREQTIERLKAGTLDIV
IATDVAARGLDVERITHVINYDIPNDTEAYVHRIGRTGRAGRTGDAILFVAPRERHLLHA
IERATGQTITAMHLPSIEDVADRRMSQFKDQLSEVLNSQDLAVFESLIADYQQEKDVGLG
EIAAALAYMVQKERPLVPVEAPVSKPMRSDSGGAGRPPSSRRRSEDERGGGSSARPPRGG
GGATSGGEDVPMRRFRLDVGESHGAQVKNIVGAIANEAGIPSRNIRKVQIGAEHTTVELP
ADIQASVLQHLQKVWVSGRPLQIAPTDAGAPVGRAAPAKPRKILSAKPAKSEYKSKERGA
GPVKRKKPARDS
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaagaatccgatcttcgctttattgatttcgccctcgctgaaccgatccagaaa
gcggtgacagagatcggctacgaacaaccgtcgcccattcaggcgcagagcatcccgccg
ctgctggaggggcgcgacgttatcgggctggcgcagaccggtaccggcaaaacagctgca
tttgcactgccgttgttaagccgcgttgatctcagcttgcgcgtgccgcagttgctggtg
ctggcacccacccgtgagctcgctattcaagtggctgaggcgatgcagagctacgctaag
tttctccccggattccatgtgctgcccatctatggcggacagtccatgagcctgcagctc
aagcaactgcagcgtggtgtgcaggtggtagtgggtacacccggacgcattcaggatcac
ctgcgccgcaaaaccctgcgtctggatcagttgcaggccgtggtgctggatgaggccgac
gaaatgttgcgcatgggcttcattgacgcggtggaggatatcctcaaacacacgcccgat
ggccgacaggtggcactcttctctgcgacgatgccagatgccattcgccgcatcgccaaa
acctatctgcgcgaccccctggaaatccgtattaaatcagcgacgactacagtggccgct
attcgccagcgctattggcaggtcagcggtacccacaagttggatgctcttacccgtatt
ttagaggtagaggagagtaatgcctggctggtttttgtgcgtacaaaaacagcgacggta
gagctggcggagcgcctggaagcgcgcggctatgcctgtggcgccctcaatggcgatctc
agtcaggcgttgcgcgaacagaccattgagcgactgaaggcggggacgctggatattgtt
attgcgactgatgtggcggcccgcggtttggatgtcgaacggatcacccacgtgatcaat
tatgacattccgaatgacaccgaggcctatgttcaccgtattggccgcactgggcgtgcc
ggacgtaccggagacgcaattctctttgtcgcgccgcgcgaacgccatttgctgcacgcc
atcgagcgggcgacggggcagacaattacggccatgcatctgcccagcatagaagatgtt
gcggatcggcggatgagccagttcaaggatcagttgtcagaagtgctgaatagtcaggat
cttgcggtttttgaatccctcattgcggattatcagcaggaaaaggacgtaggtttggga
gaaatcgctgcggcgctggcttacatggtgcagaaagagcgccccctggttcctgtcgag
gccccggtatcaaagccgatgcgcagcgactctggaggtgccggtcgaccgccatcatca
cgtcgccgctctgaagatgaacggggtgggggcagcagtgcacggccgccgcgcggcggt
ggtggtgccacctcgggaggggaggatgtgcctatgcgccgcttccgcttggatgtgggt
gaaagccacggtgcgcaagtcaaaaatattgtcggtgcgatcgctaatgaggctgggata
cccagccgcaatattcgcaaggtacagattggcgccgagcatactactgtcgagcttcct
gcggatatacaagcgtcagttttgcagcatctgcaaaaggtctgggtctcggggcggcct
ttgcagatcgccccgacggatgcgggcgcaccggtgggacgtgctgcccctgcgaagccg
cgcaagatactctccgccaagccggcaaaaagtgagtataaatccaaggagcgtggcgct
gggccagtaaagcggaagaagcccgcgcgcgatagctga
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