Apis florea (little honeybee): 100870440
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Entry
100870440 CDS
T09140
Name
(RefSeq) collagen alpha-1(I) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
aflr
Apis florea (little honeybee)
Pathway
aflr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
aflr00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
100870440
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
aflr00536
]
100870440
Glycosaminoglycan binding proteins [BR:
aflr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100870440
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
100870440
NCBI-ProteinID:
XP_012347091
EnsemblRapid:
LOC100870440
LinkDB
All DBs
Position
Unknown
AA seq
1802 aa
AA seq
DB search
MRRDHVKQQWRTLRLPRNIHSVSWPVCLLVILGLYPVITDIILQDMEKNIVDLVDGIGMQ
QERIGVTITQNRCHRNDTIAYDITESALLTIDTSTLFPTGIPRDFSILVVAKPKIGYPVA
TLFAIYSDSGEEQLVLSLGNDVILYYSTNPDDEGKAISFGIDISDGKWHRLGISIKGNTV
TLILDCTRQISKELRRNLDERIDINGIIIIGQQIVDGNMYLGGLEMLKIAPIPDAAYEIC
TIFAPDCRNHSRHRLTNLRNYSPMIHSTSPTYYEGASQSIRSSSYAGEAFSTIRSYYETN
YNNLNSSQNYGRTSSTISKLNVSYNEENENLKETDDENDENESEEENTWIEDNEDYNYNR
LVNATYATRSTTDTYLRNQSAVFSDNIEGITVDRYETTPPQILEISDNLIGKTRDGSKYS
ESSEGSYYGSTYYNNRGPPGPRGFPGPPGVAGPSGKKGEPGRDGLAGLPGVPGSPGNVFI
IPTMNQQGNEKGPDAQIEALRQMLSQHMIAMRGSEGPMGLTGTSGPEGPPGPQGQKGEPG
EIGEPGPRGERGIPGNTGREGRRGRPGRDGERGLSGAPGMKGEQGVPGLPGLPGDKGERG
AVGATGEQGLPGHEGMQGDDGPPGLPGLPGEMGPRGFIGPRGFPGLPGNPGIPGSEGPPG
AKGNTGPPGPPGSPGSPGPIGAVGPPGPQGLLGPTGLVGPQGKPGIPGLSGADGSPGHPG
NPGIPGTKGEQGLQGPQGPIGFPGVRGIKGDEGKRGSPGERGEKGEKGVEGDKGDVGAKG
EPGLSGPQGIPGLEGLEGPKGFEGPRGESGLIGSPGEKGKTGPPGFVGYPGNPGEKGDKG
QPGREGPNGDKGERGTNGAQGERGEPGPRGFRGARGRRGAEGLPGPKGDTGQPGPPGLQG
EPGPPGIEGPRGFVGAPGQIGLNGKDGILGPPGERGPVGDSGPPGPPGAPGVIGPQGPAG
EPGQPGEPGSPGNPGVPGELGPPGQQGKEGPQGPPGLPGKEGQPGPGGLPGFPGERGLSG
LPGMPGVKGEIGSPGLPGPSGDKGVQGEPGKDGEPGPQGSQGSKGPPGPVGLKGDRGEPG
PIGPIGRDGLPGQRGLPGSPGPVGVPGEDGDKGDIGPPGEKGFKGSQGEMGPPGPIGIQG
IRGEPGAIGLPGEKGPPGEIGRQGAKGEDGPVGASGPPGPVGPQGLPGSQGLKGEVGDAG
LVGPVGPAGSPGAQGPRGPKGSEGLQGLPGPEGLQGQKGEAGAPGLPGSIGPEGKPGERG
PPGPKGEEGKSGPPGPPGERGINGPEGPKGNAGPPGFPGPPGEPGLIGVKGDSGKDGEDG
KPGDPGPPGEIGPPGKEGLPGPPGKQGSEGPAGVQGSPGSPGEKGDVGPPGAQGSPGSIG
PQGLPGPFGLPGIRGLPGLAGENGPPGMAGAVGAPGKVGPIGPKGPKGDRGKRGLKGHRG
ELGDAGLKGEEGEKGEQGPRGVPGSEGPKGNQGPPGSMGFKGNDGPPGLPGIEGLVGPKG
SAGNDGPKGEIGPPGPPGPPGPPAEQPMIPPELLFTKEQLLRRRRDISTETGNKDEEEKN
SESLDKDDRVEEELGPKFLDMYSSIYAMRQELDRIRKPIGSRENPARTCKDLFYGHPHFH
DGWYWIDPNLGMADDSVYVYCNMTNMGETCVYPDIHTSQMPNIPWRKENNKTDWYSNLRG
GFKITYEAIGVVQLNFLRLLSQEAYQNFTYTCINSVAWYNILNFNYNSSIRLLGANEDEF
SYTGIKPQIVMDNCKTRKNKGETVLLIQSKKLQQLPLVDFYPIDYGLPHQAFGFTVGPIC
FK
NT seq
5409 nt
NT seq
+upstream
nt +downstream
nt
atgcggcgagaccacgtgaagcagcaatggagaacactgcgattgcctcgcaacatccac
tccgtttcttggccagtttgtcttctcgtaatactaggtttatacccggtgataaccgat
attatcttacaggatatggaaaagaatatcgtggatctggtcgatggtattggaatgcaa
caagagcgcattggagtgacaataactcaaaatcgttgtcacagaaatgacacgatcgcg
tacgacattacggaaagcgcgctactcacgatcgatacgagcacccttttccccactggc
ataccacgcgatttttccattttagtcgttgccaagccaaaaatcggatacccagtcgcc
acgttgtttgccatctacagtgacagcggtgaggaacaattggtgttatcattgggcaat
gacgtcattctttactatagcacaaatccggatgacgagggcaaagcaatatcgttcggg
attgatatttccgatggaaaatggcaccgtttaggaatcagtattaaagggaacaccgtc
acgctgattcttgactgcactcggcaaatttccaaagagttgcgaagaaatcttgacgaa
aggatcgacatcaatggcatcataatcattggtcaacagatcgtcgatggcaatatgtat
ttgggtggtttggagatgctgaagattgccccgataccagacgcggcttacgaaatctgc
acgattttcgcgcctgactgtaggaatcattcgagacatagattgacaaacttgcgtaat
tatagccccatgattcattccacttctcctacttattacgagggcgcgagtcaatcaatc
cgaagttccagctacgcgggtgaagcattctcaactattagatcgtattacgaaacaaat
tacaataatttaaattcgtctcaaaattatggcagaacatcgtctacaatatctaaacta
aatgtttcgtataacgaggaaaatgagaatttaaaagagacggatgacgagaatgatgag
aacgaaagcgaggaagagaacacatggatcgaagataacgaggattataactataatagg
cttgtgaatgcaacatacgctacgagatcaaccacggacacgtatcttcgtaatcaaagt
gctgtattttccgacaacattgagggaataacggtagatcgttatgaaacgacaccaccg
caaattcttgaaatttccgataacttaatcggaaaaactcgggacggatcgaaatattcg
gagtcttcggaaggatcgtactacggttcgacttattacaataacaggggtccacccgga
ccacgaggatttccaggaccaccaggtgtggcagggccatccggtaaaaaaggggagccg
ggaagagatgggctggcaggtttacccggtgtacctggttcaccggggaacgtgttcata
ataccgacaatgaatcagcaaggtaacgagaagggaccggatgctcagatagaagctttg
aggcaaatgctttcgcagcatatgatagctatgagaggtagcgagggtcctatgggtctg
acgggtacttctgggcccgaaggacctccaggacctcaaggccagaaaggagaacctggc
gaaattggcgagcctggtcctcgtggagaaagaggtattcctggaaatactggcagggag
ggtagacgaggtcggcctggtagagacggggaacgaggtttaagcggggcaccggggatg
aaaggggagcaaggtgtacctggattgcctggattgccaggagataagggggaaagagga
gctgtgggtgctaccggtgaacaaggtttgccaggtcacgagggaatgcagggtgacgat
ggtccaccaggtttgccaggtttacccggtgaaatggggcctagaggatttataggacca
cgaggttttcccggattaccaggaaatcctggtattcctggaagcgaaggtccgccagga
gcaaagggcaatactggaccacctggtcctccaggctcaccaggatctccgggtccaatc
ggagctgtaggtccaccaggacctcaaggccttctgggcccgactggcttagtggggcca
caaggaaagcctggaattcctggcctgtcaggagcagacggatcgcctggtcatcctgga
aatccaggtattcctgggacgaagggtgaacaaggtttgcagggtccgcaaggcccgata
ggttttccaggagttcgcggtatcaaaggtgacgaaggaaaacgtggatcacccggcgaa
cgcggagaaaagggtgaaaaaggtgtggaaggggataaaggtgacgttggcgcgaaaggg
gagcctggattatcaggaccgcaaggaattcctggactggaaggtttggaagggcctaaa
ggtttcgaagggccgcgtggtgaaagtggattgattggatcgccaggtgaaaaagggaaa
actggccctccaggttttgtcgggtatccaggaaatcctggggagaaaggtgataaaggt
caacctggaagagaaggtcctaatggggataaaggagaaaggggtactaatggtgcacaa
ggggaacgcggtgaaccaggtcccagaggatttagaggtgctcgtggtagaagaggagct
gaaggattgccaggaccgaagggtgatacaggacaaccaggtcccccgggattacaagga
gaacctggtccaccaggcatcgaaggacctcgtggattcgtaggagcacctggccaaatt
ggtcttaatggaaaagatggtattcttggtcctcccggagaacgagggccagtgggagat
tctggaccgccaggtcctccaggcgcgcctggcgttattgggccgcaagggccggctggt
gaaccggggcaaccaggagaacctggaagtcctggaaatccaggagtacctggagaatta
ggtcccccaggacagcaaggaaaagaaggaccacaaggaccacctggtcttccaggaaaa
gagggtcaacccggtcctggtggtttaccaggatttcctggagaacgagggctaagtggc
ttaccgggaatgccaggtgtaaaaggagagataggatcaccgggtcttccaggtccatca
ggtgataaaggtgttcaaggcgagcctggaaaagatggtgaacctggtcctcagggaagc
caaggatcgaaaggaccacctggaccagttggtttgaaaggagacaggggtgagcctgga
ccgatcggccctattggacgagatggcttaccaggacaacgtggcttgccaggttctcct
ggccctgttggggttccaggagaagatggtgacaaaggagatattggaccacccggggaa
aaaggatttaaaggatctcagggggaaatgggtcctccaggaccaattggaatacaagga
attcgcggagaacctggggctattggtttgccaggtgaaaaagggccacccggagaaatt
ggaagacaaggagcaaaaggggaagatggtcctgttggagcgtcaggacctcctggtcct
gtaggaccgcaaggattgcccggttcgcaaggattaaaaggagaagtgggggatgcggga
ttagttggccccgtaggacccgcgggaagtccaggtgcacaaggcccaaggggtcctaag
ggaagcgaaggtttgcaaggtcttccagggccggaaggtcttcaaggacaaaagggagaa
gctggagcgcctggattaccaggctcgataggtccagaaggcaaaccaggtgaaagaggt
cctcccggtccgaaaggagaggaaggaaagagtggtcctccaggtccgcccggtgaacgc
ggtataaatggtccagagggaccaaagggcaatgcaggacctcctggtttccctggacca
ccgggagaaccgggtttaattggtgtgaaaggagactctggaaaagacggcgaggatgga
aaacccggagatcctggaccaccaggagagattggaccaccaggaaaagagggactacct
ggccctcctggaaaacaaggatccgagggaccagcgggagtgcaaggaagtccgggttcg
ccaggagaaaaaggagacgtgggtcctcctggtgcacaaggtagtcccggatctatagga
cctcaaggtcttcctgggccatttggtttgccaggtataagagggcttccagggcttgct
ggagaaaatggtccccccgggatggcaggggccgttggcgccccaggaaaagttggaccg
atcgggcccaagggtccaaagggcgacagaggtaaacgaggactcaaaggacatcgaggt
gaattaggagatgctggtttgaaaggagaagagggagagaagggggaacaaggaccacga
ggtgttccgggatccgaaggtcccaagggtaaccaggggccaccaggctcaatggggttt
aaaggaaatgacggacctccaggacttcctggaatagagggattggtagggcctaaaggt
agtgctggaaacgatgggccaaaaggagaaattggtcctccgggtcctccaggccctcct
ggaccacctgcagagcaaccaatgattcctccggaactgttgttcacgaaagaacaactt
ttgcgtaggagacgcgatatttcgacagaaacgggcaataaggatgaagaggagaaaaat
tcggaaagtttggataaagatgatcgcgttgaagaggaattagggcctaaattcttggat
atgtacagttctatatacgctatgagacaagaattggatcgaatacgtaaaccaattggt
agcagagaaaatcctgcgagaacttgtaaggatctgttttacggtcatccccatttccac
gatggttggtattggatcgatccaaatttaggaatggccgacgactctgtatacgtttat
tgtaatatgacgaatatgggcgaaacgtgtgtgtatccagatattcatacgagtcaaatg
ccaaatataccgtggagaaaggaaaataataaaactgattggtattcgaatttacgcgga
ggatttaaaattacatacgaagctattggagtagtgcaattaaattttctgcgtttactg
agtcaagaggcttatcaaaatttcacttacacttgcattaacagtgttgcctggtacaat
attttgaattttaactataattcctccatacgattgcttggtgcgaacgaggatgaattt
tcgtacaccggtatcaagccacaaatcgtaatggacaattgcaaaacgcgtaagaacaaa
ggtgaaacggtgctcttaattcagagtaaaaaattgcaacagttaccattggtggatttt
tatcctatcgattatggattacctcatcaggcgtttggtttcacggttggcccgatttgt
ttcaaataa
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integrated database retrieval system
