Acidimicrobium ferrooxidans: Afer_0918
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Entry
Afer_0918 CDS
T00956
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K03727
ATP-dependent RNA helicase HelY [EC:
5.6.2.6
]
Organism
afo
Acidimicrobium ferrooxidans
Brite
KEGG Orthology (KO) [BR:
afo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afo03019
]
Afer_0918
Enzymes [BR:
afo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Afer_0918
Messenger RNA biogenesis [BR:
afo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Afer_0918
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
DSHCT
ResIII
Helicase_C
AAA_22
nSTAND3
AAA_16
IstB_IS21
PhoH
AAA_25
T2SSE
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
ACU53863
UniProt:
C7LYQ5
LinkDB
All DBs
Position
936851..939298
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AA seq
815 aa
AA seq
DB search
MDRFQDEALEALDEGSSVLVSAPTGSGKTIVALYGMAQALRQGRRAFYTSPLKALSNQKY
HELARFFGPQHVGLLTGDTTLNPDAPAVVMTTEVLRNMIYASPAAIDDVDVVVLDEVHYL
QNPYRGSVWEEVIIHLPRRVRLVSLSATVSNVAEFAGWLAAVRGTTRVVEATHRPVPLEH
RYLYTPRRSETPVAIPVLVGGRENPQGAQLDPPWLARSRYRDGLRARTVHRIELVEFLAH
EGDLPAIVFIFSRAGCERARDEVVASGIRLTTAAERVAIRRIVDERLDGLAERDLAAVGF
APFLAGLEAGIAPHHAGMIPPFREVVEACFERALVKVVFATETLSLGINMPARSVVIERL
VKFDGESHQLLKPGEYTQFAGRAGRRGIDERGTSYVVWGPQVAFSDVAHVVRADFYPITS
SFRPTYNMAANLVKRYTPERAAELLDLSFAQYQRDAEVVRRQARLRAGNEDVVAATTQPE
RAEWIEPGRVVSVPSERGGAERALLLITRVSQRRGGGLRISASSESGRVYRLDEGHVASM
RPKGKVRLRAVHGSRDQGIAMAWARIRARRQQARELGEPSKAFLDERARGRRTDAPAPSP
RSRELLSEQLERVRTVLERFGFAEGWSLTQRGERLTKVYVETDLAVVRFLHDAEIDGVGP
AEFAAIASWFVFEPRPHSPRSGPWPASAAMARLYERAEALMQEQWAAESSLRLPRSRGPE
PGISRALWRWARGEPLGAVLATDEMAPGDFVRVVKQVADLLRQIAVAWDDDVVSSLARRA
EAAVVRGVVALSSEVVAEDPERMPHGVLELDERPA
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atggatcggttccaggacgaggccctcgaggcgctcgacgaagggtcttccgtcctcgtc
agcgctcccaccggttccggcaagaccatcgtcgcgctctatggcatggcccaggccctt
cgacagggacggcgagccttctacacgtccccgctcaaggcgctgtccaaccagaagtac
cacgagctcgcccgtttcttcggtcctcagcacgtcgggttgctcactggggacaccacg
ctgaacccggacgcgcctgccgtcgtgatgacgaccgaggtgctgcggaacatgatctac
gcctcgccagccgcgatcgacgacgtcgacgtcgtggtgctcgacgaggtccactacctc
cagaacccgtaccggggatcggtgtgggaggaggtcatcatccacttgccgcgccgcgtc
cgcctcgtctcgttgtcggcgacggtgtcgaacgtggcggagttcgctggctggttggcc
gccgttcgaggtacgacgcgcgtcgtggaggcgacccaccgccccgtcccgctcgagcat
cgctacctctacacgccgcggcgttcggagacgccggtcgcgataccggtcctcgtcggt
gggagggagaacccccagggggcacagctcgatccaccctggctcgcgcgcagtcgttac
cgagacgggcttcgggctcggacggtccatcggatcgagctcgtcgagttcctcgctcac
gagggcgatctgcctgccatcgtgttcatcttctcccgtgctgggtgcgagcgcgcccgc
gatgaggtggtcgcctccggcattcgactcaccaccgcggccgagcgggtcgcgatcagg
cgcatcgtcgacgagcgtctcgacgggttggccgagcgcgacctcgcggccgtcgggttc
gcgccgttcctcgcgggactcgaggcgggcatcgcgccccaccacgcgggcatgatcccg
ccgtttcgcgaggtcgtcgaggcgtgcttcgagcgcgcgctcgtcaaggtggtgttcgcg
accgagacgctctcgctggggatcaacatgccggcccgatcggtcgtcatcgagcgcctg
gtcaagttcgacggggagtcccaccagctgctcaagcccggcgaatacacgcagttcgct
ggacgggcagggcgtcgggggatcgacgagcgcggcaccagctacgtcgtgtggggtccg
caggtcgccttcagcgacgtcgcgcacgtcgtccgggcggacttctacccgatcacgagt
tcgttccgtcccacctacaacatggcggcgaacctcgtgaagcgctacacgcccgagcgc
gcagctgagctgctcgatctctcattcgcgcagtaccagcgagacgccgaggtcgtccgg
cgccaggcgcggttgcgagcaggcaacgaggatgtcgtcgcggcgacgacgcagccggag
cgcgctgagtggatcgagccgggtcgggtggtgagcgtcccgagcgagcgcggcggtgcc
gagcgagcgctgctgctcatcacgcgggtgtcccagcggcgcggtggcgggcttcggatc
agtgcgtcctcggagtcgggcagggtgtatcgcctcgacgaggggcacgtcgcctcgatg
cgacccaagggcaaggtgcgcctccgtgcggtgcacggctcccgggaccaggggatcgcc
atggcctgggcacggatccgggcgcggcgtcagcaggcgcgggagctcggcgaaccgtcg
aaggcattcctcgacgagcgtgcgcgtggtcgtcgcaccgacgcgccagcgccgtcgccc
cgttcgcgtgagttgctctcggaacagctcgagcgtgtgcgcacggtgctcgagcgcttc
ggcttcgccgaggggtggagcctgacgcagcgaggcgagcgactgacgaaggtctacgtc
gagacggacctcgcggtcgtcaggttcctccacgacgccgagatcgacggcgtcggcccg
gcggagttcgccgcgatcgcctcgtggttcgtgttcgaaccacgacctcattcgccccga
tccggtccgtggccagcgagcgcggccatggcgcggctctacgagcgggccgaggcgctc
atgcaggagcagtgggcggcggagtcgtcgctcagactgcctcgatcgcgcggtccagag
cccgggatctctcgcgccctctggcggtgggcgcggggagagccgctgggggcagtgctc
gcgaccgacgagatggcaccaggggactttgttcgcgtggtcaaacaggtcgcggacttg
cttcgccagatcgcggtcgcctgggacgacgatgtggtctcgtcgctcgctcggcgagcc
gaggcggcggtcgttcgcggcgtggtggcgctgtcgtcggaggtcgtcgccgaggatccc
gagcgcatgccccacggagtgctcgagctcgacgagcggccggcgtag
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