Actinoplanes friuliensis: AFR_06270
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Entry
AFR_06270 CDS
T02892
Name
(GenBank) putative ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
afs
Actinoplanes friuliensis
Pathway
afs03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
afs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AFR_06270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
afs03400
]
AFR_06270
Enzymes [BR:
afs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AFR_06270
DNA repair and recombination proteins [BR:
afs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AFR_06270
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_N
DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID:
AGZ39543
UniProt:
U5VRH9
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All DBs
Position
complement(1375043..1376110)
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AA seq
355 aa
AA seq
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MTDQLEEYRRRRDARRTPEPVPRARPRPTTGNRFVIQQHHARSLHWDVRLERDGVLVSFA
VPRGLPRDRARNHLAKHTEDHPLEYLDFAGEIPAGEYGGGRMTIHDRGTFETDKWRDDEI
SVTFHGERTSGRYVFFQTGGNDWMVRRMDPSEPGWETMPEAVEPMLATRAAGLPPDDQDW
GYELSWAGRRTLIQVSGGRVKVTDAEGTDVTSWYPELRPLGEALAPLEAVLDGEIVAFDG
ARVSPELLERRKAPKDSAAARRAAERTPVQFLAYDLLWLEGHSTVELVRYAERRELLEGL
DLAGDNWQTPPYFSGGGSFALDAAQAQGLDGVVAKRLDSPYLPGRRSRLWLSVTT
NT seq
1068 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaccagctggaggagtaccgacggcggcgggacgcccggcgtacgccggaaccc
gtgccgcgtgcccggccccgcccgaccacggggaacaggttcgtcatccagcagcatcac
gcccgcagcctgcactgggacgtccggctggagcgtgacggcgtgctcgtctcgttcgcc
gtgccgcggggtctgcctcgcgatcgcgcccgcaaccacctcgccaagcacaccgaggac
cacccgctcgaatacctggacttcgcgggcgagatcccggccggtgagtacggcggcggc
cggatgaccatccacgatcggggcaccttcgagaccgacaagtggcgcgacgacgagatc
agcgtcactttccacggtgaacgcaccagcgggcgctacgtcttcttccagacgggcggc
aacgactggatggtccgccggatggacccctccgagccgggctgggagaccatgcccgag
gccgtcgagcccatgctcgcgacccgggccgccggcctgccgcccgacgaccaggactgg
gggtacgagctgagctgggccggccgccgcaccctgatccaggtgtccggtggacgggtc
aaggtcaccgacgccgagggcaccgacgtcacctcgtggtacccggagctgcgcccactg
ggtgaagcgctcgccccgctcgaggccgtactggatggggagatcgtggctttcgacggc
gcgcgggtctctccggagctgctggagcgccgtaaggcgccgaaggattccgcggccgcg
cgccgggccgccgagcgcacgccggtgcagttcctcgcctacgacctgctctggctggag
ggccattccacggtggagctggtccggtacgccgagcgccgcgagctgctggagggcctg
gacctggccggtgacaactggcagacgccgccgtacttctccggtggcgggtcgttcgcg
ctcgacgccgcccaggcgcagggcctggacggcgtcgttgcgaagcggctcgactcccct
tacctaccgggtcgccgcagccggctctggctctctgtcactacctag
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