Actinoplanes friuliensis: AFR_24440
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Entry
AFR_24440 CDS
T02892
Name
(GenBank) RNA polymerase ECF-subfamily sigma factor
KO
K03088
RNA polymerase sigma-70 factor, ECF subfamily
Organism
afs
Actinoplanes friuliensis
Brite
KEGG Orthology (KO) [BR:
afs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
afs03021
]
AFR_24440
Transcription machinery [BR:
afs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AFR_24440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF6596
Sigma70_r2
Sigma70_r4_2
TPR_8
Sigma70_ECF
TPR_2
Sigma70_r4
TPR_21
TPR_11
TPR_1
TPR_7
Motif
Other DBs
NCBI-ProteinID:
AGZ43154
UniProt:
U5W216
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All DBs
Position
5281135..5282394
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AA seq
419 aa
AA seq
DB search
MPDEWTAGASVEAVFREERGRLLAALVRRFGDLDLAEEVTSEAIEAALTHWPAQGVPPAP
GAWLMTTARRRAVDRLRRDQALASRLAILQVEADRAGPVPAVEPGDDLPDERLQLFFTCA
HPALAAEDRGALILRFLAGLTTPEVARAFLVPPATMAKRITRAKTKIRDARIPFRVPGAD
ELPGRLPGVLQAIYSLFTEGYAASSGPHLQRPRLAEEAIRLARILHRLLSGERETAGLLA
LMLLVHARRDARTGPDGAPVLLDEQDRSRWDAPMIAEGSALAAASLTGGPPGPYGVQAAI
AALHDEAPHLDATDWEQIVALYDVLLALTPSPVVALNRAAAVAMRDGPEAGLELLDELAD
EPALRGHHPYPAARADLLHRLGRDAEAAAAYREALDLAGTGPDREHLRRRLDLLDRPPA
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
gtgccggacgagtggaccgccggcgcctccgtggaggcggtgttccgggaggaacgtggc
cggttgctggcggccctcgtccgccgcttcggcgacctcgacctggccgaggaggtcacg
tccgaggcgatcgaggcggccctgacgcactggccggcgcagggggtgccgcccgcgccg
ggcgcctggctgatgaccacggcccgccgccgggccgtggaccggctccggcgtgatcag
gcgctggcctcccggctggccatcctgcaggtggaggccgaccgggcgggtccggtgccc
gcggtcgagcccggtgacgacctgccggacgagcggctgcagttgttcttcacctgtgcg
catccggcgctggcggccgaggaccgcggggcgctgatcctgcgtttcctggccggtctg
accacaccggaggtcgcgcgggcgttcctggtgccgccggccacgatggccaagcgcatc
acccgggccaagacgaagatccgcgacgcccgcatcccgttccgggtgccgggcgccgac
gagctccccgggcggttgccgggggtcctgcaggcgatctactcactcttcaccgagggg
tacgcggccagctccggcccgcacctgcaacgcccccgcctggccgaggaggccatccgc
ctggcccgcatcctgcaccgcctcctgagtggcgagcgcgagacggcgggtctgctcgcg
ctgatgctgctcgttcacgcccgacgtgacgcgcggaccggcccggacggtgctccggtg
ctgctggacgagcaggatcggagccgctgggacgcgccgatgatcgctgaggggtcggcg
ctggcggcggcgtcactcaccggcggcccgcccggcccgtacggcgtgcaggcagcgatc
gcggcgctgcacgacgaggcgccgcacctggacgccaccgactgggagcagatcgtcgcg
ctctacgacgtgctgctcgcgctgacaccgtcgcccgtcgtcgccctgaaccgcgccgcc
gccgtggcgatgcgtgacggcccggaggccggtctggaactgctcgacgagctggcggac
gagcccgcgttgcgcggtcaccacccgtacccggcggcacgcgccgacctgttgcaccgc
ctgggacgtgacgccgaggcggccgcggcctaccgtgaggcgctggacctggccggcacc
ggcccggaccgcgagcacctgcgccgccgcctggacctgctcgaccgtccccctgcctga
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