Anaeromyxobacter sp. Fw109-5: Anae109_0939
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Entry
Anae109_0939 CDS
T00559
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
afw
Anaeromyxobacter sp. Fw109-5
Pathway
afw03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
afw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Anae109_0939
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
afw03400
]
Anae109_0939
Enzymes [BR:
afw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Anae109_0939
DNA repair and recombination proteins [BR:
afw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Anae109_0939
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
ABS25148
UniProt:
A7H8V2
LinkDB
All DBs
Position
1065326..1067869
Genome browser
AA seq
847 aa
AA seq
DB search
MPDRLERYRAKRDPERTPEPFGPAEAGARALDAPRLFVVQKHAARRLHWDFRLELGGTLR
SWAVPKGPSADPSDKRMAVEVEDHPIEYANFEGIIPAGNYGAGAVIVWDRGTWRPVGDPY
DGLARGKLVFQLSGHKLHGEWTLVRTRAAQGGKQQWLLLKHRGDAWAGPGRPFPEESVLS
GRLLEELAAGEGRAEAAVRAAEGLGAPRRALADADARPMLAETREGPFDAPGWLFELKYD
GYRLVARREGSRVSLRYRSGEDATALYPELAKALESWPLDAVLDGEVVVLGPDGRPSFQA
LQGRAQLARPADVARAALERPATYFVFDLLSLAGLDLRALPLVERKRLLAEVAPRLGPVR
LAEHVEARGEDLYREVRARGLEGIVAKRADAPYRAGRSAAWLKIRVERTGDFAIVGFTAP
AGARARFGALHLAVHDGEGLLYAGSVGTGFGERLLEELHARLAPRARKTPPCRGAVPRGR
GHTWVEPELVCEVRFREWTAEGLLRQPVFLRLREDKRPEEAVREVAPHEGPPPVPRPARA
ERRVEVTNGAKVWFPAEGITKAEVVDYYRAIAPFMLPYLRDRPVVLTRYPDGIDGKSFFQ
KDAPEWRPEWIRTVRIRSEEAERDLDHFLVDDADGLAWIANLGTIPLHVWASRAGALERP
DWCVVDLDPKEAPFEHVVRIARALHALCDDLGLPSYPKTTGQKGLHVLVPLGGQLTHAQS
RTLGELLARAVEGELPRLATTARALSARGGRVYLDFLQNGYGKTIAAPYAVRPRPGAPVS
TPLRWSEVTPRLDPARFTIRNVPARARRLRADPLLPVLSERPDLAAALERLRVRMGEGER
AAARRRS
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgaccgcctcgagcgatatcgcgccaagcgcgacccggaacggacgccggagccg
ttcggcccggccgaggcgggggcacgcgcgctcgacgccccgcgcctgttcgtggtccag
aagcacgccgcccgccgcctccactgggacttccggctcgagctgggcgggacgctgcgc
tcctgggccgtccccaaggggccctccgccgacccctccgacaagcggatggcggtggag
gtggaggaccaccccatcgagtacgcgaacttcgaggggatcatccccgcggggaactac
ggcgccggcgcggtgatcgtctgggatcgcgggacctggcggccggtcggcgatccgtac
gacgggctggcgcgcggcaagctcgtcttccagctctccggccacaagctgcacggcgag
tggacgctcgtccgcacgcgcgcggcgcagggcggcaagcagcagtggctgctcctgaag
caccgcggcgacgcgtgggccggcccgggccggcccttcccggaggagtcggtgctctcc
ggccggctgctcgaggagctcgccgccggcgagggacgcgccgaggccgcggtgcgcgcg
gcggaggggctcggggccccgcggcgagcgctggcggacgcggacgcccgccccatgctc
gcggagacgcgcgaggggccgttcgacgcgccggggtggctgttcgagctcaagtacgac
gggtaccggctcgtcgcgcgtcgcgagggctcgcgcgtctcgctgcgctaccggagcggc
gaggacgcgacggcgctctacccggagctcgcgaaggcgctcgagtcctggcccctcgac
gccgtcctcgacggcgaggtggtcgtgctcgggcccgacggccgcccgtccttccaggcc
ctccagggccgcgcgcagctcgcgcgcccggcggacgtggcgcgcgccgcgctcgagcgt
cccgccacctacttcgtcttcgatctcctctcgctcgccggcctcgacctccgcgcgctc
ccgctggtggagcgcaagcgcctcctcgcggaggtcgcgccgcggctcggacccgtccgc
ctcgccgagcacgtcgaggcgcgcggcgaggacctctaccgcgaggtgcgcgcccgcggg
ctcgaggggatcgtggcgaagcgggcggacgcgccctaccgcgccggccgctccgccgcg
tggctcaagatccgggtcgagcgcacgggcgacttcgcgatcgtcggcttcaccgcgccg
gccggcgcccgcgctcgcttcggcgcgctgcacctcgccgtgcacgacggcgaggggctc
ctgtacgcgggcagcgtcgggacggggttcggcgagcggctgctcgaggagctccacgcg
cgcctcgcgccgcgcgcacgaaagacgcctccctgccgcggggcggtcccgcgcgggcgc
gggcacacctgggtcgagccggagctcgtgtgcgaggtgcgcttcagggagtggacggcg
gagggcctcctccggcagccggtgttcctgaggctgcgcgaggacaagcggccggaggag
gccgtgcgcgaggtcgcgccgcacgagggcccgccgccggtgccgcgcccggcgcgcgcc
gagcggcgcgtggaggtgacgaacggcgccaaggtgtggttcccggcggagggcatcacc
aaggccgaggtggtggactactaccgcgcgatcgcgcccttcatgctgccgtacctgagg
gaccggcccgtcgtgctgacgcgctaccccgacggcatcgacgggaagagcttcttccag
aaggacgcgccggagtggcggcccgagtggatccgcacggtgcgcatccgcagcgaggag
gcggagcgcgacctcgaccacttcctcgtcgacgacgccgacggcctcgcgtggatcgcg
aacctggggaccatccccctgcacgtgtgggcgagccgcgccggcgcgctcgagcggccg
gactggtgcgtcgtggatctcgatccgaaggaggcgccgttcgagcacgtggtgcgcatc
gcgcgggcgctgcacgcgctgtgcgacgacctcgggctgccctcgtacccgaagaccacg
gggcagaagggcctgcacgtgctcgtccccctcggcggccagctcacccacgcgcagtcc
cggacgctcggcgagctcctcgcccgcgcggtggagggggagctgccgcggctcgccacc
accgcgcgcgctctctccgcccgcggcggccgcgtctacctcgacttcctgcagaacggg
tacggcaagacgatcgccgcgccgtacgcggtccgccccaggccgggcgcgcccgtctcc
acgccgctgcgctggagcgaggtgacgcccaggctcgatcccgcgcgcttcaccatccgg
aacgtcccggcgcgcgcgaggcggctgcgcgccgacccgctgctgcccgtcctgtcggag
cggcccgacctcgccgccgcgctcgagcgcctgagggtgcgcatgggcgagggggagcgc
gccgcggcgcggcggcgctcgtag
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