Anaeromyxobacter sp. Fw109-5: Anae109_1007
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Entry
Anae109_1007 CDS
T00559
Name
(GenBank) DNA polymerase LigD polymerase domain
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
afw
Anaeromyxobacter sp. Fw109-5
Pathway
afw03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
afw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Anae109_1007
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
afw03400
]
Anae109_1007
Enzymes [BR:
afw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Anae109_1007
DNA repair and recombination proteins [BR:
afw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Anae109_1007
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
ABS25216
UniProt:
A7H920
LinkDB
All DBs
Position
complement(1140405..1141322)
Genome browser
AA seq
305 aa
AA seq
DB search
MEVAGRRLVLKNLDKVFYPQAGFTKGDVIDYYARVAPVLLPHLRDRPLTMKRYPEGVEGM
FFYEKRCPRHRPAWVHTEKVWSAGNDEFIDYCVANDLPTLVWAASIADLELHTSLSLARA
VDTPTLLVFDLDPGPPADVVTCCDVALLLRRLLARLELEAFPKTSGSKGLQLYVPLNGPA
SYDDTKPLAHAVAQVMERTNPELVVERMTKQLRAGKVLVDWSQNDPHKTTVCVYSLRARP
RPTVSTPVTWAEVEKAARTRRGEGLVFEAADVLARVERRGDLFEPVLIRRQRLPGPGTIE
RAVAR
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
gtggaggtcgcaggccgccgcctcgtcctcaagaacctcgacaaggtcttctacccgcag
gccgggttcacgaagggcgacgtcatcgactactacgcccgcgtcgcgccggtgctgctc
ccgcacctgcgcgaccgcccgctcacgatgaagcgctaccccgaaggcgtcgagggcatg
ttcttctacgagaagcgctgcccgcgccatcggccggcgtgggtccacaccgagaaggtg
tggagcgcgggcaacgacgagttcatcgactactgcgtcgcgaacgacctgcccacgctc
gtgtgggcggccagcatcgcggatctcgagctgcacacctccctctcgctcgctcgcgcg
gtggacaccccgaccctgctcgtcttcgatctcgatcccgggccgcccgcggacgtggtc
acctgctgcgacgtggcgctcctgctccgccgcctgctcgcgaggctcgagctcgaggcc
ttccccaagacctccggctcgaaggggctccagctctacgtgccgctcaacggcccggcg
agctacgacgacacgaagccgctcgcgcacgccgtcgcccaggtgatggagcggacgaac
ccggagctcgtcgtcgagcggatgaccaagcagctgcgggccggcaaggtgctcgtggac
tggagccagaacgacccgcacaagacgaccgtgtgcgtgtactccctgcgggcgcgccct
cgccccacggtgtccacgcccgtgacctgggcggaggtggagaaggcggcccgcacccgg
cggggcgagggcctcgtgttcgaggccgccgacgtcctcgcccgggtcgagcggaggggc
gacctcttcgagccggtcctcatcaggcggcagcgcctgcccggtcctgggaccatcgag
cgcgcggtggcccgctag
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