Agrobacterium sp. RAC06: BSY240_2160
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Entry
BSY240_2160 CDS
T04501
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
agc
Agrobacterium sp. RAC06
Pathway
agc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
agc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BSY240_2160 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
agc03400
]
BSY240_2160 (ligD)
Enzymes [BR:
agc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BSY240_2160 (ligD)
DNA repair and recombination proteins [BR:
agc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BSY240_2160 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AOG10868
UniProt:
A0A1B3NZS8
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All DBs
Position
2191822..2194410
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AA seq
862 aa
AA seq
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MSLSEYRRKRDFKATPEPKAAKVTSKGNSFVIQKHAARRLHYDLRLEMDGVLKSWAVTRG
PSLVPGEKRLAVHVEDHPLAYGDFEGVIPPGQYGSGEVIVWDRGTWEPLHDTGKGYKKGH
LEFTLKGEKLGGHWHLVRMARKEDETRENWLLIKGEDEAARQPDDPDIIEEKPLSVKSGR
SIESLKGDGKAAVWNSRKTSKSSKTGKTPATRHASSSQSGSKIKGTKPGSLPEFLPPALA
RLVKSAPKGDRWLHEIKLDGYRIQARIDHGRVQLLTRTGLDWTERFGERIASALKGLPVQ
TALLDGEIVVESGNGSSDFSLLQQDLSDGRDDRFTHYLFDIMYLDGEDLTGASLRDRKAV
LESLISEVSLPLKYSSHFDESGDLVLKHACRLSLEGVISKVADAPYRSGRGRDWVKSKCT
ARQELIIGGYVPSSVSDKAIGSLIMGVNEVDGLRHVGRVGTGYSRTLARQIFTKLQPLLR
DKSPFKDKLTGTERKDAVFVEPEIVAEIEFRGWTGDAHLRHASFRGLREDKAARDVVQEA
PTETASTKKAGAGKTGSSTDRKKKAEAQAARRAITLTHPDRLYWPEAGVTKEGLADYYAM
VWPRIAPFIVDRPLALLRCPEGHEKTCFFQKHGWRGMRKEIITIRDPKDDEGHVGIHDIE
GLLSLVQGAALEIHPWGSRAGDLERPDMVNIDLDPGPDVTWERVIEAAFEVRQRFEEMGL
TGFVKTSGGKGLHVVAPLKPKAKWPEVKAAMKALADGMSADSPTDYVSTVSKAKRKGKIL
IDYLRNGRGATAVAPYSTRARAGAPVSMPLAFEELSPHILPNHFTVENVPARLASLDADP
WADFRRAEAPLASTDGKKRKTR
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctctccgagtatcgccgcaaacgcgacttcaaggccacgccggaaccgaaggcc
gcaaaggtcacgagcaagggcaacagtttcgtcatccagaaacatgcggccagacgcctg
cattacgacctgcgtctggaaatggacggtgtgctgaaaagctgggccgtcacgcgcggt
ccgagcctcgtgccgggcgagaagcggctggcggtgcatgtggaggatcaccctctcgct
tacggcgacttcgaaggtgtcatcccgcccggacaatacggatccggcgaagtgatcgtc
tgggaccgtggtacgtgggaaccgctccacgacaccggcaaaggttacaagaagggccac
ctcgagttcacgctgaagggcgagaaactcggcggacactggcatctggtgcgcatggcg
cgcaaggaagacgaaacacgcgagaactggctgttgatcaagggagaagacgaggcggca
cggcaaccggatgatcccgacatcatcgaggagaagccgctttcggtgaagagcggccga
tcgatcgaaagtctgaagggcgatggcaaggctgccgtctggaactcacgcaagacgtca
aaatcatccaagacagggaagacgccagcaactcgccatgcctcttccagccagagtggc
tctaagatcaaggggacaaagccaggcagcctcccggagtttctgccgcctgcccttgcg
cgcctggtcaagtcggcccccaagggtgatcgatggttgcacgaaatcaagctggacggt
taccggatccaggcacggatcgatcatggtcgggtgcagctattgacgcggacgggtctg
gactggacggagcgcttcggtgagcggatcgcatcggccctcaaggggctgcctgttcag
accgcgctgctcgatggtgaaatcgtggtcgagagcggcaatggcagcagcgacttttcc
ctgctgcagcaggatctgagcgacggtcgcgatgatcgcttcacacactacctcttcgat
atcatgtatcttgacggagaggatctgacgggtgcctcgctcagggaccgcaaggcagtg
ctggagtcattgatcagcgaggtcagcctaccgctcaaatattccagccatttcgacgag
agcggtgatctcgtcctcaaacatgcctgccgcctcagtctcgaaggggtgatctccaag
gtcgccgatgcgccctatcggtccggccgcggacgggattgggtcaagtcgaaatgtacg
gcccgccaggaactgatcatcggcggctatgtgccctcctccgtttcagacaaggccatc
ggttctctgatcatgggcgtcaacgaagtggacggactgcgccatgtcgggcgtgttggc
accggatacagccgaacgctggcccggcagatattcaccaagcttcagccactgttgcgc
gacaagagcccgtttaaagacaagctgacgggcaccgaacgaaaggacgcggttttcgtc
gagccggagattgtcgccgagatcgagtttcgcggatggacgggagacgctcacctgcgc
catgcctccttccgggggctgcgcgaggacaaggccgcacgggacgtggtccaggaggcg
ccgacggaaactgcatcgaccaagaaggcaggggctggcaagactggctcgtcaacggac
aggaagaaaaaggccgaagcgcaggctgcacgccgtgccattaccctgacacatcccgac
cggctctattggcctgaggccggcgtcacgaaggaagggcttgcggactactacgccatg
gtctggccccgtatcgccccgttcatcgtcgaccgaccactcgccttgttgcgatgcccc
gaggggcacgagaagacgtgctttttccagaagcatgggtggcgtggcatgcgcaaggag
atcatcaccatccgcgacccgaaagacgacgagggtcacgttggaatccacgatatcgaa
gggctgttgtccctggtgcagggggcggcgctcgaaatccacccctggggctcgcgagcg
ggcgatctcgagcggcccgacatggtgaacatcgacctcgatcccggtcctgatgtcacc
tgggaacgggtgattgaagcggccttcgaggtgcgtcagcgctttgaagaaatgggcctt
accggtttcgtcaagacatccggtgggaaaggcctgcatgtggtggcgccactcaaaccg
aaggcgaaatggcctgaagtcaaagcggccatgaaggcactggcggacggcatgagcgct
gacagtccgaccgattacgtctcgacggtcagcaaggcaaaacgcaagggaaagatcctg
atcgactatctgcgcaatggcaggggggcaacggcggtcgccccctattccacacgagcc
cgggccggcgctccggtgtcgatgccgctcgcgttcgaggagttgagcccccacatcctt
cccaaccatttcacggtcgaaaacgtgcctgcgcggctggcgagcctcgatgccgatccg
tgggccgatttccgcagggccgaagcgccgttggcatcaacagacgggaaaaagaggaag
acccgctag
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