Actinobacillus genomosp. 1: NYR63_02025
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Entry
NYR63_02025 CDS
T09109
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
agp
Actinobacillus genomosp. 1
Pathway
agp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
agp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
NYR63_02025 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
agp03400
]
NYR63_02025 (recB)
Enzymes [BR:
agp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
NYR63_02025 (recB)
DNA repair and recombination proteins [BR:
agp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
NYR63_02025 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
ResIII
AAA_12
AAA_30
AAA_25
AAA_11
Motif
Other DBs
NCBI-ProteinID:
WGE91750
LinkDB
All DBs
Position
434514..438116
Genome browser
AA seq
1200 aa
AA seq
DB search
MKTLSPIELPLNCTALIEASAGTGKTFTMANLYLRLLLGVGCAPLTVEQILVVTFTKAAT
EELRDRIRKNIKACRMFLQEYDAEKAYDANDFFFQLAQRIEGVEEAILRLRIAEREIDLA
SIFTIDSFCQKMLFQFAFDSGVRFDSDLQPDENDLLRRISEEVWREMFYPMTLNETALVV
QFLGTPEKALGEIKQFIGKDLPELSAEQGWIQADFAHYAQQSNDFFSQAKQHWLNNGEKI
VGLVQAELAKTYAKGIKKSLSRASYKSNLISDWIEKVNRWANSEDTFLPKEFERFCQDFM
QSKAEAGAEPLSDPLFVKNQQIWTAYHIQFTPDKQKALLVYQYLSAIRQKMADYKATHSE
KSFDDLRAFLNQALKSERGEILAEQIRRLFPFAMIDEFQDTDKEQYEIFHKIFMQGDRRN
RGFIMIGDPKQSIYKFRGADIFTYLTASQQAQEKRTLPKNWRSLPEIVTATNRLFEFPES
VEHSPFLYDGIRFQAVEHKQTDAQLVGAEHFNCYLQAEFNEQEAAEHCAYQIQQQLKVME
VGDFGLNFAKDKVFTAFQAKDIAILVRGKNQAILLKEALATRGIRSVFLSDRRSVYASDI
AQELKWVLYACLNPSHQANVLTAIGSSLWGLSAAEIYRLKNDENAWDRQVSAFIHYQQIW
QQQGILPMLHQLFMQEGIIHRLRAGADSDRRLTDLLHLAELLQNAMPSLENESALVRWYE
RQLENPQEKEDQQLRLESEDELIKIITIHGAKGLQYPIVWLPFIGKNNRGDRVLPGVETP
KVSVYRNTEDEVSWHLGSRDDKTQELMDKAEFAEDLRLLYVALTRAESQLNLILPTTFTK
GWNAMHYLLSNGELGGTTSFVTEVPTSDYLDRKGIKYHAVELNSQPIEDDWRPTPSLPSE
LQVRSFQREMTQDGQISSFTALHAYHEWNEQFGVGQTVVSEKVQDYDRQIETSVLDEPDW
FAENTAYSAYQFPHSAKVGSVLHRFFEHSDFQQAVDFAQIRTICEQLNLDENWYEPLQQW
FEKVLETPFSEAEFALKDVPMTKRLNEWQFYLRLKNSDGLRRLNQLLKQYSVVSAKLPDL
NLPQLEGYLRGFVDCIVQVNDKFYLIDYKSNFLGYLAQDYSRQNLEKTIGQYRYDLQYLL
YTLALHRYLRARLGEQYEYERDFGGVAYLFLRGMNGTPNSGVFFEKPCKELIEGMDELFG
NT seq
3603 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaccctttctccgattgaactgccgttaaattgtaccgcattaattgaagcgtct
gccggtaccggtaaaacctttaccatggcgaatttatatttgcgtttgctactaggagtt
ggttgtgcgcctttaacggttgaacaaattttggtggtaacttttactaaagcggcaacc
gaagaattacgtgatcgtattcgtaaaaatatcaaagcctgtcgtatgtttttacaagag
tacgatgcggaaaaagcctatgatgccaatgatttcttcttccaattagctcagcggatt
gaaggtgtggaagaggcgattttacgcttacgcattgccgaacgagagatcgatttagcc
agtatttttacgattgacagtttctgccaaaaaatgttgtttcaatttgctttcgattcg
ggcgttcgcttcgatagtgatttacaaccggacgaaaatgatcttttacgccgcatcagc
gaagaagtttggcgtgaaatgttctatccgatgacgctaaatgaaacggctttagttgtg
caatttttaggtacgccggaaaaggctttaggtgaaatcaaacaatttatcggtaaagat
ttgccggaactttctgctgaacaaggttggatacaggctgattttgctcattatgcccaa
caatcgaatgatttttttagccaagccaagcaacattggttgaataatggcgagaaaatt
gtcgggttagtacaagcggaattagctaaaacctatgctaaagggataaaaaagtcatta
agccgagcttcatataaaagtaatctgatctcggattggattgaaaaagtaaaccgttgg
gcaaatagcgaagacacgtttttaccgaaagaatttgaacgtttttgccaagattttatg
caatctaaagcggaagccggtgcggagccgttatctgatccgctttttgtaaaaaatcag
caaatttggaccgcttaccatattcaatttacgccagataaacaaaaggcgctattagtt
tatcaatacttatccgctattcgccaaaaaatggcggactataaagcgacacatagtgaa
aagagttttgatgatctgcgagcattcctaaatcaagctctgaaaagcgaaagaggagag
atattagccgaacagattcgtcgcttatttccgtttgcgatgattgacgagttccaagat
actgacaaagaacaatatgaaattttccataaaatctttatgcaaggagatcggagaaat
cgtgggtttattatgatcggcgatccgaaacagtcgatttataaattccgtggagcggat
atttttacctatctgaccgcttcgcaacaagcacaagaaaagcgaaccttaccgaaaaac
tggcgttcgttacctgaaattgttaccgccactaaccgtttgtttgaatttcccgaaagt
gtcgaacatagcccgtttttatatgacggtatccgttttcaagcggtggaacacaagcag
acggatgcgcaattagtcggagccgagcattttaattgttatttacaagcggaatttaat
gagcaagaagcggcggaacattgcgcttatcaaattcagcaacaattaaaagtaatggaa
gtgggtgatttcggtttgaattttgctaaggataaggtgtttactgctttccaagcaaaa
gatattgcgatcttagtacgaggtaaaaatcaggcaatattacttaaagaggctttggca
acacgaggcattcgttcggtcttcctttcggacagacgtagcgtatatgcttcggatatt
gctcaggaattaaaatgggtgttatatgcgtgtttgaatccgtctcatcaagctaacgtg
ctaactgctatcggttcaagtttatgggggctttcggcagcagagatttatcgccttaaa
aatgatgaaaatgcttgggatagacaagtttcagcctttattcattaccaacaaatctgg
cagcagcaagggattttaccgatgttgcaccaattatttatgcaagagggaattattcat
cgtttgcgtgccggagccgacagtgatcgccgtctaaccgatttattgcatttggcggaa
ttactacaaaatgcaatgccgagtttagaaaacgaatcggcgttagtgcgttggtatgaa
cgtcaattagagaatccgcaagagaaagaggatcaacaactccgtttggaaagtgaagac
gagctaatcaaaattatcacgattcacggtgccaaaggcttacagtatcccatcgtatgg
ttaccgtttatcggtaagaataatcgcggtgatcgtgtgttaccgggagtcgaaactccg
aaagtttctgtttaccgtaatacggaagacgaggttagttggcatttaggcagtagagat
gataaaacacaggaattgatggataaggcggaatttgccgaagatttacgtctattatat
gttgcgctgacccgtgccgaatcgcaattaaatctgattttaccgacaaccttcactaaa
ggttggaatgcgatgcactatttgttgagtaacggtgaattaggcggaacgacctctttt
gtgaccgaggtgcctacatcggattatttggatagaaaaggcattaaatatcatgcggtt
gagttaaattcgcagcctatagaagacgattggcgacctaccccctctttaccgagtgaa
ttacaagtgagatcttttcagcgtgaaatgactcaagacggacaaatcagtagttttact
gcattacacgcttatcatgaatggaatgaacaattcggtgtaggacagacggtagtgagc
gaaaaagtgcaagattatgaccgacaaatcgaaacgtccgttttagacgagccggattgg
ttcgcggaaaataccgcatattccgcttatcaatttccgcacagtgcaaaagtcggtagt
gttttgcaccgcttttttgaacacagtgacttccaacaagcggtcgattttgcgcaaatt
cgtactatttgtgagcagttaaatttagatgaaaattggtatgaaccgttacaacaatgg
tttgaaaaggtgcttgaaacgccgtttagcgaagcggaatttgcgctaaaagacgttccg
atgacaaagcgtttgaacgaatggcagttttatttacgtttaaaaaattctgacggatta
cgcaggctaaatcaattattaaagcagtatagtgtggtgtcagccaaattgccggatttg
aatttaccgcagttggaaggttatttacgcggttttgtcgattgtatcgtacaagtaaat
gataaattttacttgatagactataagtcgaatttcttaggctatttagcgcaagattat
agccgacagaatctggaaaaaacgatcggacaatatcgctatgatctgcaatatctgctt
tatacattggcgttacatcgctatttacgggcgcgtttaggtgagcagtacgagtatgag
cgtgattttggcggcgtggcatatttattcttacgaggcatgaacggcacaccgaatagc
ggtgtatttttcgaaaaaccttgcaaagaattgatcgaaggaatggatgagctgttcggc
taa
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