Aphis gossypii (cotton aphid): 114119418
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Entry
114119418 CDS
T05869
Name
(RefSeq) collagen alpha-1(V) chain-like isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
ags
Aphis gossypii (cotton aphid)
Pathway
ags04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ags00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
114119418
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ags00536
]
114119418
Glycosaminoglycan binding proteins [BR:
ags00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114119418
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_3
Laminin_G_2
DUF5348
Laminin_G_1
Glyco_hydro_59_C
Motif
Other DBs
NCBI-GeneID:
114119418
NCBI-ProteinID:
XP_027836767
LinkDB
All DBs
Position
Unknown
AA seq
1656 aa
AA seq
DB search
MARTAVVVFALIATIGLWRNADAEDRRARTADWTATNGFSILEATNIAEQNVGVSVTNGR
CANDKAYKLNERAILSIETSQIFPEFQQFPLDFSILVEIRTDQGSDTNRVFLIYNDSGDE
QLGLTVGSDIELFYNDMEGQEGYKTKVKFNTIINDNRWHKLLFSIKGNSVTMILDCDVQV
TKELKRNTTISNSGILMIGQQLDETFYLGDIQELRFYSTPDAAYEMCSVRTDVCIETQNK
TETSKTNVTDVNEFEELSTVDMNSLEITSVTHSPRSPDANISQPTYGVLQPQCVSAVRGY
PGPPGEQGPQGPKGDPGRDGIDGYVGKQGPPGHVFLIPLNQNQGEKGPDSQAEMFRQMLA
QHMLSMRGVDGPMGMTGVVGPEGPTGPEGPKGESGEQGEVGPRGIRGMPGPSGRDGHRGR
PGRDGERGVTGPPGVKGEPGVTGAMGLPGEKGDRGLPGQVGVTGPRGNDGPQGEEGPQGL
AGLPGEMGPRGFSGLRGFPGSPGPPGVPGSEGPTGPKGNTGNTGIPGPPGQIGPAGPIGS
TGAPGALGPPGDQGPPGKPGLPGLPGADGLPGHPGNTGAVGVKGDTGPSGSPGPIGFSGT
RGVKGDIGVRGPIGEKGDKGDRGSDGEKGDQGLKGEPGLAGPPGLVGIEGPEGPKGSEGP
HGESGAIGLSGEKGKPGPAGLPGYPGAPGEKGDKGAYGKDGISGEKGERGNTGLPGERGE
TGPRGFRGARGREGSEGIPGPKGDTGQPGPTGAPGERGIPGADGLRGFIGPTGAPGISGK
DGLPGFPGERGPPGDTGPIGVTGIPGVVGPPGQSGEVGSIGEPGPSGQPGLPGEAGRPGD
AGKEGPPGPVGLPGKSGEPGSPGLQGFPGDRGFPGVPGAAGLKGDTGPPGPLGSTGDKGQ
QGESGKEGPQGAEGRKGPTGTPGAVGLKGDKGEIGLAGPMGNDGMVGARGVPGPPGPVGP
PGEDGDKGEIGVPGEKGFKGSKGEMGPVGALGNPGLRGEPGPVGVPGEKGPIGEIGRQGA
KGEEGPAGITGPPGPPGTQGIPGPIGPKGEPGDVGAKGPTGQPGAPGEIGPRGFKGVDGQ
YGPPGADGPTGSKGEPGVIGPPGPQGLDGKHGERGPMGAKGDDGKIGTQGPTGPRGNIGP
EGPKGNAGVPGFPGIQGEPGIQGPKGDRGRDGDDGKIGAPGPPGEIGPTGNPGIVGPPGR
TGNEGPSGPQGSSGLPGEKGDQGLIGGTGLPGPIGISGTPGAQGPQGPIGSPGLAGEVGL
PGRPGKDGEPGKIGEIGPPGEKGERGKRGPKGHPGEIGPMGIKGHEGEKGDKCERGDRGS
EGQKGEMGPIGVIGAKGNDGPVGLPGVEGLPGPKGIEGIAGNKGEQGSPGPPGPPGPPGE
LPLLPPELAGFQQNALARWKREFNDINTEDSKKSKTDNSGSNDNNDGPKYIDIVSSIYGM
RQDLERIRKPVGTRDNPVMTCKDLFYGHPQFKDGWYWIDPNLGMPYDAVYVYCNMSNGGE
TCVFPDIHSSQMPNIPWRKEGDKTDWYSNLRGGFKITYETVGPVQMNFLRLLSQNGYQNF
TYTCINSAAWFNAKSNSYDMAVKFMGENSVQFSSEQGSPKVDVLVDGCKTRKSKSETVFE
IRTNKLDSLPLTDFYPVDYGLPHQAFGFEVGPVCFK
NT seq
4971 nt
NT seq
+upstream
nt +downstream
nt
atggcccggacggccgtcgtggttttcgcactcatcgcgaccatcggtctgtggcgaaac
gcggatgcggaggatcgccgagcacgaaccgccgactggaccgcgacaaacggttttagc
attctggaagctacaaatatcgctgaacaaaacgtgggcgtcagcgttactaacggacgt
tgtgctaacgacaaggcgtacaaacttaacgaaagagcaattttaagcatagaaacgtct
cagatatttcccgagttccaacaatttcctttggatttttcaatattagttgaaataaga
actgaccaaggttccgatacgaacagagtttttctcatctacaacgactcgggagatgaa
caattgggtttgacagttgggagtgacattgagttgttttataacgacatggaaggccaa
gagggatataagaccaaagtaaaatttaatactatcatcaacgataatcggtggcataaa
ttattgttcagtatcaaaggaaattcagtgactatgattttggactgtgatgtacaagtc
acaaaagaactaaagaggaatacgacaattagcaattcaggaattttgatgattggtcaa
caactagatgaaacgttttacctgggtgacattcaagagttaagattttattcaacgcca
gatgctgcttatgaaatgtgttccgttcggacggatgtctgtattgaaacgcaaaataaa
accgaaacatcaaaaactaacgtgacggacgtaaacgaattcgaagaactttcaacggtc
gacatgaattcattggaaataacgagtgtaacgcacagcccaagatcgcctgacgcaaac
atcagccagccgacatatggtgtcctgcaacctcagtgcgtgtcggccgttcgtggttat
cccggtccacccggagaacaagggccccaaggcccaaaaggcgatcctggccgcgatggc
atagacgggtatgttggtaaacaaggacctccgggacacgtgtttctaataccactgaat
caaaatcagggggagaaaggtccggatagccaagctgaaatgttcagacaaatgttagca
caacacatgctgtcaatgagaggagttgatggaccaatgggtatgactggagtagtgggt
ccggaaggtccaactggtcccgaaggtcctaaaggcgagtctggggaacaaggagaagtg
ggaccaagaggtattagagggatgcctggtccatcaggtcgtgatggacacaggggtaga
ccgggcagagatggagaacgaggtgttacaggtccacccggagtcaaaggagagcctgga
gtaacaggagcaatgggattgcctggagaaaaaggagatcgcggtcttccgggtcaagtt
ggtgttacaggccctcgtggtaatgatggtcctcaaggtgaagaagggcctcaaggttta
gctggcttacctggagaaatgggacccagaggattttctggtcttcgtggatttcctggt
tcacctggtcctccaggagttccaggttcagaaggacctacaggtccaaagggtaacact
ggaaatactggaattcctggaccaccaggccaaattggtcctgctggtcctattggttct
actggagcaccaggtgctttaggtcctccaggagatcaaggacctccgggaaaaccaggg
ttgcccggattaccaggtgctgatggactacctggtcaccccggaaatacaggtgctgtg
ggagtcaaaggagatacaggaccaagtggatcaccgggtcctataggtttttccggaaca
cgtggtgtaaaaggtgacataggtgttcgtggtccaataggagaaaaaggagacaaagga
gacagaggatccgacggagaaaagggagatcaaggacttaaaggagagcccggattggct
ggaccaccaggtttagttggaattgaaggtccagaagggccaaaaggatctgaaggacct
cacggtgaaagtggtgcaattggattatcgggtgaaaaaggtaaaccaggacccgctggg
cttccaggttatcctggagctccgggtgaaaaaggtgacaaaggagcatatggtaaagat
ggaatttctggcgaaaagggagaacgaggaaacactggattaccaggagaaagaggagaa
actggacctagaggatttagaggcgctagaggacgagaaggatccgaaggaattccagga
ccaaagggtgataccggacaacctggccctactggggcaccgggagaacgtggaataccg
ggtgctgatgggttaagaggatttattggccctacaggcgcacccggaattagtggaaaa
gatggtttacctggatttccaggagaacgaggtcctccaggagacactggacccataggt
gttactggaatacccggagtagttggaccaccaggtcaatcaggcgaagtaggttctatt
ggtgaaccaggaccatcaggtcaacccggtttaccaggagaggcaggaagaccgggcgat
gcaggaaaagaaggacctccaggcccagttggtctgcctggaaaatcgggtgaacctggt
tctccgggattacaagggtttcctggtgatagaggatttccgggagttcctggagcagct
ggactaaaaggtgatacaggaccgccgggtcctcttggatcaactggagataaaggtcaa
caaggtgaatcaggcaaagaaggaccacagggtgcagaaggacgcaaaggaccgacaggt
acaccaggtgcagtgggtctgaaaggagataagggtgaaatcggacttgctggtccaatg
ggaaacgatggaatggtgggagcaagaggcgttccaggaccaccagggcccgttggacca
ccaggagaagatggagataaaggtgaaattggcgttcccggagaaaagggattcaagggt
tcaaaaggagaaatgggtccggtcggagcattaggaaatccaggattaagaggagaacca
ggaccagttggggtgccaggagaaaaaggcccaattggtgaaatcggtagacaaggagct
aaaggagaagaaggacctgctggaattacaggaccacctggaccaccgggaacacaaggt
atcccaggaccgattggaccaaaaggcgaacccggagacgttggtgccaaaggtcccacc
ggacaacctggagcacctggtgaaatcggccccagaggatttaaaggtgttgatggacag
tatggcccaccgggcgcagacgggccgacaggatctaaaggtgaaccaggtgtaattgga
ccacctggtcctcagggtcttgatggaaaacatggcgagcgcggtccaatgggcgcaaaa
ggagatgacggaaaaatcggaacgcaaggaccaacaggaccaagaggcaacattgggcca
gaaggaccaaaaggtaatgcaggtgttcctggatttccggggattcaaggtgaacctggc
attcaaggtccaaaaggcgataggggtcgagatggtgatgatggaaaaataggtgctcca
ggacctccaggtgaaattggcccaactggtaatccaggtatcgtgggtcctccaggacga
actggaaacgaaggtccatctggacctcaaggaagttcaggattacctggagaaaaaggc
gatcaaggtttaataggaggtacaggtttacctggacctataggaatatcaggtactccg
ggtgcacagggacctcaaggaccaataggttcacctggtttagcaggtgaagttggttta
ccaggaagaccaggaaaagacggagaaccaggaaaaattggtgaaattgggcctcccggt
gaaaaaggagaaagaggaaaacgaggaccaaaaggtcatcctggagaaataggtccaatg
ggtatcaaaggtcacgaaggcgagaaaggtgacaagtgtgaacgaggagatcgaggatct
gaaggacaaaaaggagaaatgggtcccattggagtaataggagctaaaggaaatgatggc
ccggttggacttccaggagttgaaggtttaccaggtcccaaaggaatcgaaggaatcgct
ggaaacaagggtgaacaaggatctccaggaccaccaggtcctccgggaccaccgggtgaa
ttaccattgttaccacccgaattagcaggctttcagcaaaacgccttggctcgatggaag
cgggaattcaatgacatcaacacagaagacagtaaaaaatcaaaaacggataattcagga
tcaaatgacaataacgatggtcctaaatacatagatattgttagttcaatttacggtatg
agacaagacttagagcgaataagaaagcccgtcggaacccgcgataaccctgttatgacg
tgtaaagatttattttacgggcatccgcagtttaaagatggatggtactggattgaccca
aacttgggcatgccatacgacgccgtgtacgtgtactgtaacatgagtaacggtggagaa
acgtgcgtgtttcccgacatacactcaagtcaaatgcctaacatcccgtggcgtaaagaa
ggtgacaagacggactggtattcaaatctcagaggcggtttcaaaattacttacgaaacg
gtgggaccggtgcaaatgaacttcctacgactgctcagccaaaatggatatcaaaacttc
acgtacacgtgcataaacagtgctgcgtggttcaacgcaaaatctaactcgtatgacatg
gctgtcaagtttatgggagagaattcagtgcagttttcgtctgaacaaggatcgcccaaa
gtagacgtgttggtagacggctgcaagacgagaaaatcaaaaagcgaaactgtttttgaa
atccgtaccaataagttggacagtttgccgttgacagatttctatcctgttgactatggg
ttgccacatcaagcattcgggttcgaagtgggacccgtgtgcttcaaatga
DBGET
integrated database retrieval system
