Aeromonas hydrophila AH10: VU14_16535
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Entry
VU14_16535 CDS
T03886
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ahi
Aeromonas hydrophila AH10
Pathway
ahi03030
DNA replication
ahi03410
Base excision repair
ahi03420
Nucleotide excision repair
ahi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ahi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VU14_16535 (ligA)
03410 Base excision repair
VU14_16535 (ligA)
03420 Nucleotide excision repair
VU14_16535 (ligA)
03430 Mismatch repair
VU14_16535 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ahi03032
]
VU14_16535 (ligA)
03400 DNA repair and recombination proteins [BR:
ahi03400
]
VU14_16535 (ligA)
Enzymes [BR:
ahi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
VU14_16535 (ligA)
DNA replication proteins [BR:
ahi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
VU14_16535 (ligA)
DNA repair and recombination proteins [BR:
ahi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
VU14_16535 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VU14_16535 (ligA)
MMR (mismatch excision repair)
DNA ligase
VU14_16535 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
VU14_16535 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
DZR_2
Motif
Other DBs
NCBI-ProteinID:
AKA18387
UniProt:
A0A8H9PP94
LinkDB
All DBs
Position
complement(3705360..3707366)
Genome browser
AA seq
668 aa
AA seq
DB search
MSDILSRHRQLCELLIEYGHQYYVLDNPTVPDAEYDRLMRELIALEAEHPELKTSASPSV
RVGGQPLTAFKQVRHEIPMLSLDNVFSGEELQAFEQRMRDRLKREVSFTFCCEPKLDGLA
VSLLYVDGQLVQAATRGDGTTGEEITENVRTIKAIPLSLRGEGWPARLEVRGEVFMPKAG
FEAMNAKALAAGEKVFVNPRNAAAGSLRQLDSRITASRPLAFYAYGVGVGGEQLGGSHFG
RLNQLKEWGLPLSPEVKLKEGAAGCQAFHDDILARRGELPYEIDGVVYKVDAIPLQEELG
FVARAPRWATAHKFPAQEEMTELENVEFQVGRTGAVTPVAKLKPVFVGGVTVSNATLHNA
DEIERLGVMIGDTVIVRRAGDVIPQIVAVVEAQRPADARAILFPTECPVCGSAVERLEGE
AVTRCSGGLFCEAQRKEAIKHFAARRAMDVDGLGDKIVEQLVDKGLVKTPADLFSLNAIQ
LAGLERMGQKSALNLVAAIDAARSTTLPRFLFALGIREVGEATALNLANHFLTLDALRAA
SVEQLLEVADVGDIVAKHVYYFLRQPHNIEVLEALLAAGIHWPAIEKKEAAEQPFAGKTF
VLTGTLTTLSRNDAKAALQALGAKVAGSVSAKTDVLVAGEAAGSKLVKAQELGITVWSEE
ELQQALQG
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgagcgatatcctctcccgccaccgtcaactgtgtgagctgctgatcgagtacggtcat
cagtactatgtgctggacaaccccacggtgccggacgccgaatacgatcggctgatgcgc
gagctgatcgcgctggaagccgagcaccccgagctgaagacgtcggcctcgccgagcgtg
cgggtgggcggccagccgctgaccgccttcaaacaggtgcgccacgagatccccatgctg
agcctggacaacgtattcagcggcgaggagctgcaggccttcgagcagcgcatgcgcgat
cgcctcaagcgggaggtgagctttaccttctgctgcgagcccaagctggacggcctggcg
gtgagcctgctctatgtggatggccagctggtgcaggccgctacccgaggcgatggcacc
acgggtgaggagatcaccgagaacgtgcgcaccatcaaggccattcccttgtccctgcgc
ggcgagggctggccggcccggctggaagtgcgtggcgaggtgtttatgcccaaggcgggg
ttcgaggcgatgaacgccaaggcgctggccgccggcgagaaggtgttcgtcaacccgcgc
aatgccgccgccggcagcctgcgtcagctcgactcgcgcatcaccgccagccgcccgctg
gccttctacgcctatggcgtgggggtgggtggtgagcagctaggtggctctcacttcggt
cgcctcaatcagctcaaagagtgggggctgccacttagtcccgaggtgaagctcaaagag
ggggcggccggttgccaggcgttccacgacgacatcttggcgcgccgcggcgagctcccc
tacgagattgacggcgtggtctacaaggtggatgccatccccctgcaggaggagctcggc
tttgtggcccgcgccccgcgctgggccaccgcccacaagttcccggcccaggaagagatg
acggagcttgagaacgtcgagttccaggtcggccgcaccggcgccgtgaccccggtggcc
aagctcaaaccggtgttcgtcggcggtgtcaccgtctccaacgccaccctgcacaatgcc
gacgagattgaacgccttggcgtgatgatcggcgacaccgtgatcgtgcgccgggccggg
gacgtgatcccgcagatcgtggcggtggtggaggcgcagcgcccggcggatgcccgcgcg
atcctgttcccgaccgagtgcccggtgtgcggctcggcggtggagcggctggagggagag
gcggtgacccgctgctccggcggcctgttctgcgaggcgcagcgcaaggaggcgatcaag
cacttcgccgcccgtcgtgccatggacgtggacggccttggcgacaagatagtggagcag
ctggtggacaaggggctggtgaagaccccggcggacttgttcagtctcaacgccatccag
ctggccgggctcgagcggatggggcaaaagtcggccctcaatctggtggcggccatcgat
gcggcccgcagcaccacgctgccccgcttcctgtttgcgctggggatccgcgaagtgggg
gaggcgaccgccttgaacctcgccaaccacttcctcaccttggacgccctgcgcgccgcc
tcggtggagcagttgctggaagtggccgacgtgggggacatagtggccaagcatgtctac
tacttcctgcgccagcctcacaacatcgaggtgcttgaggccctgctggccgccggcatc
cactggcctgccatcgagaagaaagaggccgcggagcaaccctttgccggcaagaccttc
gtgctgaccggcaccctcaccacgctgtcgcgcaacgacgccaaggcggcgctgcaggcg
ctgggggccaaggtggcgggctcggtgtcggccaagaccgatgtgctggtggcgggggag
gcggcaggctccaagctggtcaaggcccaggagctcggcatcacggtctggagtgaagag
gagctgcaacaggcgttgcagggctga
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