Aeromonas hydrophila J-1: V469_08565
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Entry
V469_08565 CDS
T03574
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ahj
Aeromonas hydrophila J-1
Pathway
ahj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ahj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V469_08565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ahj03019
]
V469_08565
03009 Ribosome biogenesis [BR:
ahj03009
]
V469_08565
Enzymes [BR:
ahj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
V469_08565
Messenger RNA biogenesis [BR:
ahj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
V469_08565
Ribosome biogenesis [BR:
ahj03009
]
Prokaryotic type
rRNA helicases
V469_08565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
CMS1
Motif
Other DBs
NCBI-ProteinID:
AJE35931
LinkDB
All DBs
Position
1862580..1864475
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AA seq
631 aa
AA seq
DB search
MSDTEQLPLFSELGLAAPVLKALQDVGYERPSPIQAAAIPHLMAGHDLLGQAQTGTGKTA
AFALPLLSRLEAGNRNTQILVLAPTRELALQVAEACQRYAHHMPDFHVLPIYGGASYETQ
TRALRRGAQVVVGTPGRVMDLIRRKNLDLSGLKALVLDEADEMLRMGFIDDVDWIMEQCP
AGRQVALFSATMPEQIRRVAQKHLKQPKEIKIASKTATATTIRQRYWQVTGLHKLDAMTR
LLEVEPYEALLVFVRTKNAAEELAGKLAARGHACEALHGDIPQKLRERTVDKLRQGQLDI
LIATDVVARGLDVERITHVVNYDIPYDTESYVHRIGRTGRAGRKGEAILFVAPRERRMLR
AIEHATRQAIEPMKMPSTEDINQHRLAKFKERIRETMMGEELEIYVNLVNELIEEDSADP
LELAAALAKLVQGDQPLLLDDSIPDPVFNAGNDRGGFERRDFNDRGGRDFADRGDRPARR
MPSLEPRPLKDNPDVEMERYRVDVGAHHGVKPGQIVGAIANEANIESRFIGNIDIADDFS
TVDLPKGMSAEVLEVIKKARVCQRPLQISRYTEVPAGSNTAPRPPRGDRPFRGDRPFNKD
RRPQGDRPFNKDRREGGFDKGRKFGGKRRDS
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgtctgataccgaacaactgcccctttttagtgagcttggactggccgcgcctgtactg
aaagcgctgcaggacgtgggctatgagcgcccgtcccccatccaggccgcagcaattccc
cacctgatggcgggccacgatctgctggggcaggcgcaaaccggtacagggaagaccgct
gcttttgccttgcctctgttgtctcgtctggaagctggtaaccgcaacacccagatcctg
gtgctggcaccgactcgtgaactggccctgcaggtggctgaagcgtgtcaacgctatgcc
caccacatgcctgatttccacgtgctgcctatctacggcggcgcctcctacgaaacccag
acccgcgccctgcgccgcggtgctcaggttgtcgtgggtaccccgggccgcgtgatggac
ctgatccgtcgcaagaatctggacctctccggcctgaaagccctggtgctggacgaagcg
gacgagatgctgcgtatgggcttcatcgacgacgtggactggatcatggaacagtgcccg
gccggtcgtcaggttgccctgttctccgccaccatgccggagcagatccgtcgtgtggcc
cagaagcacctgaagcagcccaaagagatcaagatcgcctccaagactgctaccgccacc
accattcgccagcgttactggcaggtgaccggtctgcacaagcttgacgccatgacccgt
ctgctggaagtcgagccctacgaagccctgctggtgttcgtacgtaccaagaacgccgcc
gaagagctggctggcaagctggctgcccgtggtcacgcctgtgaagcgctgcacggcgac
atcccgcagaagctgcgtgaacgtaccgtcgacaagctgcgccaaggccagctggacatc
ctgatcgccaccgacgtggttgcccgtggtctggacgttgagcgcatcacccacgtggtg
aactacgacatcccctacgacaccgaatcctacgttcaccgtatcggccgtaccggccgt
gccggtcgcaagggcgaagccatcctgttcgtggcaccgcgcgagcgtcgcatgctgcgc
gccatcgagcacgcaacccgtcaggccatcgagccgatgaagatgccgagcaccgaggac
atcaaccagcaccgtctggccaagttcaaggagcggatccgcgaaacaatgatgggcgaa
gagctcgagatctacgtgaacctggtgaacgagctgatcgaagaagactctgccgatccg
ctggagctggctgctgcactggccaagctggtacagggtgaccaaccgctgctgctggat
gactccattccggatccggtgttcaacgccggcaacgatcgcggtggtttcgagcgtcgt
gacttcaacgaccgtggtggccgtgatttcgccgaccgtggtgatcgcccggctcgtcgc
atgccgtccctggagccgcgtccgctcaaagacaacccggacgtggagatggagcgctac
cgcgtcgacgtgggtgcccatcacggcgtcaagccgggccagatcgtgggtgccatcgcc
aacgaagcgaacatcgagagccgcttcatcggcaacatcgacatcgccgatgacttctcc
accgtcgatctgcccaagggcatgagcgccgaagtgctggaagtgatcaagaaggcccgc
gtctgccagcgtccgctgcagatcagccgctacaccgaagtgccggccggcagcaacact
gctccccgtccgccccgtggtgatcgtccgttccgtggcgaccgtcctttcaacaaggat
cgccgtccgcagggtgaccgtcccttcaacaaggatcgccgtgaaggtggtttcgacaag
ggtcgcaaattcggtggcaagcgtcgcgacagctaa
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