Actinoalloteichus hymeniacidonis: TL08_19410
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Entry
TL08_19410 CDS
T04472
Name
(GenBank) DNA polymerase LigD-like ligase domain-containing protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ahm
Actinoalloteichus hymeniacidonis
Pathway
ahm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ahm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
TL08_19410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ahm03400
]
TL08_19410
Enzymes [BR:
ahm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
TL08_19410
DNA repair and recombination proteins [BR:
ahm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
TL08_19410
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
AOS64673
LinkDB
All DBs
Position
complement(4605853..4606896)
Genome browser
AA seq
347 aa
AA seq
DB search
MGEDSAVPEASGSSRRDHGEQRRSPIRPMLASGGQPMPQAGPRWSWEFKFDGVRAIAVVE
KSGRTRLISRNGLDVTSHYPELTVVGEVLDGRAAMLDGEIVALDEQGRPSFPLLQRRMHV
AHPKAGLTAEIPVFYYLFDLLSLDGTELTAETYLRRRELLDDLGVEGRSKLVRVPPRQQD
VDPNLLLDVARDNGLEGIIAKLNSSRYRMGERSRDWLKFPLLNTQEVVVGGWKPGSGSRA
DSVGSLILGAYDSPGVGLHYIGHVGTGFTQRMLADLLDRLRPLERLTSPFAAPVPREHAR
HARWVEPRLVGEVVFRTWSPDRRLRHSAWRGLRPDRDAAEIVVPAAQ
NT seq
1044 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaggattcggcggtgcccgaggcttccggtagcagccgccgcgaccacggcgag
cagcgcagatccccgattcggcccatgctcgccagcggcgggcagccgatgccgcaggcg
ggcccgaggtggagctgggagttcaaattcgacggcgtccgcgcgatcgcggtcgtcgag
aaatccggccgcacccggttgatcagccgcaatggcctcgacgtcacctcgcactatccc
gaactcaccgtcgtcggcgaggtgctcgatggccgggcggccatgctcgacggcgagatc
gtcgccctggacgagcagggcaggccgtcgtttccgctgctgcaacggcggatgcacgtc
gcgcacccgaaggccggcctgaccgccgagatcccggtgttctactacctcttcgacctg
ctgagcctggacggcaccgagctgacggccgagacctacctgcggcgccgcgaactactc
gacgatctaggtgtggagggccgatccaagctggtccgggtgccgccgaggcagcaggac
gtcgacccgaacctgctgctggacgtggccagggacaacggcctggaaggcatcatcgcc
aagctgaactcctcgcgataccggatgggggagcgcagccgagactggctgaaattcccg
ctgctcaacacccaggaggtggtggtgggcggctggaaacccggttcgggcagccgagcc
gactcggtgggctccctcatcctcggtgcctacgactcgcccggcgtcggactgcactac
atcggccacgtcggcaccggcttcacccaacggatgctcgccgacctgctggaccgactg
cgcccgctggaacgcctgaccagccccttcgccgccccggtgccccgcgaacacgcccgg
cacgctcgttgggtcgaaccgaggctggtgggcgaggtcgtgttccgcacctggagcccg
gacaggcggctgcggcactcagcgtggcgcgggctgcggccggatcgcgacgccgccgag
atcgtcgtgcccgctgcgcagtag
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