Actinoplanes ianthinogenes: Aiant_46050
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Entry
Aiant_46050 CDS
T07429
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
aih
Actinoplanes ianthinogenes
Pathway
aih03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aih00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Aiant_46050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aih03400
]
Aiant_46050
Enzymes [BR:
aih01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Aiant_46050
DNA repair and recombination proteins [BR:
aih03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Aiant_46050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
BCJ43948
LinkDB
All DBs
Position
complement(5053055..5054017)
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AA seq
320 aa
AA seq
DB search
MPSDRFVVRIEDREVELSNLDKLMYPAAGFTKGEVIDYYTRIAPVMLPHLRDRAVTRIRY
PNGVDGAHFFEKNKPGGTPGWVRLETLPVPGSTKSRETVEFVVVDELPTLVWLANLAALE
LHTPQWRIGADPDLLVVDLDPGAPAGLQECCAVAVLMRDRLAEDGIAAYPKTSGKKGMQL
CCPISGSQDAATVSGYAKRVAEELAALVPGSITAKMAKQLRPGKIFIDWSQNNAAKTTVT
PYSLRAGASPTASTPLTWEETEAMATGDAEARQFTAAEALDRADTHGDLLADLLQPGPVL
PGVPETGGAGSRRVRHRSDS
NT seq
963 nt
NT seq
+upstream
nt +downstream
nt
atgcccagtgaccgtttcgtggtgcggatcgaggaccgcgaggtcgagctctccaacctc
gacaagctgatgtacccggcagccggcttcaccaagggcgaggtgatcgactactacacc
cggatcgccccggtgatgctgccgcacctgcgggaccgggcggtcacccggatccgctac
ccgaacggtgtggacggcgcgcacttcttcgagaagaacaagcccggcggcacccccggc
tgggtgcgcctggagacgctgccggtcccgggctcgacgaagagccgggagaccgtcgag
ttcgtcgtcgtcgacgagttgcccaccctggtctggctggccaacctcgccgcgctcgaa
ctgcacaccccgcagtggcggatcggcgccgacccggacctgctcgtcgtcgacctggac
ccgggcgccccggccggcctccaggagtgctgcgcggtcgccgtcctgatgcgcgaccgc
ctggccgaggacggcatcgcggcatacccgaagacgtccggcaagaagggcatgcagctg
tgctgccccatctccggctcccaggacgccgccacggtctccggttacgccaagcgcgtc
gccgaggagctggccgcactggttcccggctcgatcaccgccaagatggccaagcagctc
cgtcccggcaagatcttcatcgactggagccagaacaacgccgccaagaccacggtcacc
ccgtactccctgcgcgccggtgcgtcccccaccgcctccaccccgctgacctgggaggag
accgaagccatggccaccggcgacgcggaggcccgccagttcaccgccgccgaagccctc
gaccgggccgacacccacggcgacctcctggctgacctgctgcaaccgggcccagtgctg
ccgggcgtaccggaaacaggcggcgccggatcgcggcgggtccggcaccgttccgattcc
tga
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