Amycolatopsis japonica: AJAP_20150
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Entry
AJAP_20150 CDS
T03225
Symbol
alkA
Name
(GenBank) Putative bifunctional transcriptional activator/DNA repair enzyme AlkA
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
aja
Amycolatopsis japonica
Pathway
aja03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
aja00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AJAP_20150 (alkA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
aja03000
]
AJAP_20150 (alkA)
03400 DNA repair and recombination proteins [BR:
aja03400
]
AJAP_20150 (alkA)
Enzymes [BR:
aja01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
AJAP_20150 (alkA)
Transcription factors [BR:
aja03000
]
Prokaryotic type
Helix-turn-helix
AraC family
AJAP_20150 (alkA)
DNA repair and recombination proteins [BR:
aja03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
AJAP_20150 (alkA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HhH-GPD
HTH_28
Motif
Other DBs
NCBI-ProteinID:
AIG76891
UniProt:
A0A075UWX0
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All DBs
Position
complement(4273477..4274940)
Genome browser
AA seq
487 aa
AA seq
DB search
MHEDFERCVRAVQAKDARFDGWFFTAVLTTRIYCRASCPVVPPKPENMTFYPSAAAAQEA
GFRACKRCRPDASPGSPQWNERADLVARAMRLIADGVVDTDGVSGLAARLGYSVRQVERH
VRAELGAGPLSLARAQRAQTARLLIETTGLSMIDVALAAGFGSVRTFNDTVREVFALSPT
ELRARVRTAPATAPGTLNLRLPYRKPLFPDNLFGHLVATGVPGVEEWRDGAYRRTLRLPH
GAAVVALKPEDGYIGCRLTLSDLRDLSTAISRCRRLLDLDADPAAVDEALAADPLLGPLV
AAAPGRRVPRTVDGDEFAVRAVLGQQVSTAAARTHAARLVLAHGEPVDDPDGGLTHVFPD
AASLADIDPESLAMPQSRKRTLLGLVAELNDGGLDLGAGSDWQFARERLHALPGFGPWTV
ESIAMRSLGDPDAFLPTDLGVKVAAKGFGLGPAAFAAHAERWRPWRAYAVQHLWATGDHP
INRLPAA
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
gtgcatgaggatttcgaacgctgcgtccgcgcggtccaggcgaaggacgcccggttcgac
ggctggttcttcaccgccgtcctgacgacgcggatctactgccgggcgagctgcccggtc
gtcccgcccaagccggagaacatgacgttctacccgagcgcggcggccgcgcaggaggcc
gggttccgtgcctgcaaacggtgccgcccggacgccagccccgggtcgccgcagtggaac
gagcgcgcggacctggtggccagggcgatgcggctgatcgccgacggcgtcgtcgacacc
gacggcgtgagcgggctggccgcccggctcggttacagcgtccggcaggtggagcggcac
gtgcgcgccgaactcggcgcgggcccgctcagcctcgcccgtgcgcaacgggcgcagacg
gcgcggctgctgatcgagacgaccggcctgtcgatgatcgacgtcgccctcgcggcgggg
ttcggcagcgtccggaccttcaacgacaccgtccgtgaggtcttcgccctgtccccgacg
gaactgcgcgcccgtgtccgcaccgcgccggcgaccgcgcccgggacgctcaacctgcgc
ctgccgtaccggaagccgctgttcccggacaacctcttcgggcatctcgtcgcgaccggt
gtccccggcgttgaggaatggcgcgacggcgcgtaccgccgcacgctgcggctcccgcac
ggcgcggccgtcgtcgcgctcaagccggaagacggctacatcggctgccggctcacgttg
tcggatctgcgggatctctcgaccgccatcagccgttgccgccgtctgctcgacctcgac
gccgacccggccgcggtcgacgaagccctggccgcggacccgctgctcggcccgctcgtg
gccgcggcgcccggcaggcgggtgccgaggacggtcgacggtgacgagttcgccgtccgt
gccgtcctcggtcagcaggtgtccaccgcggccgcgcggacccacgccgcccggctggtg
ctcgcgcacggtgagcccgtcgacgatccggacggtggcctcacccacgtcttcccggac
gccgcctcgctggcggacatcgacccggaaagcctcgccatgccacagagccgcaagcgg
accctgctcggcctcgtcgccgaactgaacgacggcgggctcgacctcggcgcgggaagc
gactggcagttcgcccgcgagcggctgcacgcgttgcccggcttcggcccgtggaccgtc
gagagcatcgcgatgcgctcgctcggcgaccccgacgccttcctgccgaccgacctcggc
gtcaaagtcgccgcgaaggggttcgggctcggcccagcggctttcgccgcgcacgccgaa
cgctggcgtccgtggcgcgcctacgccgtccagcacctttgggcgaccggagatcacccg
atcaaccggctgcccgccgcctga
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