Histoplasma mississippiense: HCAG_02627
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Entry
HCAG_02627 CDS
T02229
Name
(RefSeq) hypothetical protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
aje
Histoplasma mississippiense
Pathway
aje03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aje00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HCAG_02627
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aje03400
]
HCAG_02627
Enzymes [BR:
aje01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HCAG_02627
DNA repair and recombination proteins [BR:
aje03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
HCAG_02627
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
BRCT_2
BRCT
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
5448693
NCBI-ProteinID:
XP_001542456
LinkDB
All DBs
AA seq
972 aa
AA seq
DB search
MDSDGEGEPNGSRQQDSTANDLDEKYPNPPRNHSPTLPFHDLFLTLFNPLNENKKRPTGP
AAARRKVGPHGQGAAVHLSPQERRRDIIQRFISRWRKEVGDDIFPAFRLIIPEKDRDRAM
YGLKEKAIGKLLVKVMKIDKNSEDGFSLLNWKVPGQSFASRMAGDFAGRCFEVISKRPLR
TEVGDMTIDEVNEQLDKLSAASKEDEQVPILAYFYRRMNPEELMWLIRIILRQMKVGATE
RTFFSIWHPDAEALFSISSSLRRVCWQLYNTDVRLEGDETKVTLMQCFQPQLAQFQMQSF
EHMIRRMRLTEDDPTFWIEEKLDGERIQLHMKPDDSIPGGKRFGFWSRKAKEYTYLYGNG
LLDENGALTRHLQDAFADGVQSIILDGEMITWDPEHDAIVPFGTLKTAALAEQRNPFSTG
QRPLFRIFDILYLNGRPLTRYTLKDRRKALEASVIPVHRRFEIHTYDIGHSATDIDPLLR
KVVAEASEGLVLKNPNSPYRLNERHDDWMKVKPEYMTDFGESLDCIVIGGYYGSGRRGGA
LSSFLCGLRVDGSHSKTGDHPTKCYSFCKVGGGFTAADYANIRHHTDGKWMDWDPKRPPT
EYIELAGGDLQYERPDVWIKPEDSVVLCVKASSVTSTDQFRLGLTVRFPRFKRLRMDKDW
RSALSIQEFMDLKSNVEREVKEKEFKVDDSRKVRHRKAIKKPLTIAGYDGGKKLEYVGPS
GTLFDGLNFFIMTESVHQPKKTKAQLEQLVKANGGKIYQTNNVAENTICIADRTDQEEEI
AEHVDKYSDSYARDIDASELKKLLDSMHPAPALPPSSLSELESQLESHSLNERKPATPTI
SNTSTCPGWLFKGLVIYFAMPPSLSNEGNGKIPHVLPQRLYLASNLVKFAGGEVITDDDG
DMKDARITHVVVDSNPPGDKAAMAAADVAGIRRAISSRAGVGKRIPHIVGVEWVEESWGE
RTLVDEERFTPK
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggattcggatggagaaggcgagccaaacggttcaagacagcaagactcgaccgcgaat
gacttggacgagaaatatcccaatcctcctcgcaaccactcacctaccttgccatttcat
gatttattcctgaccctgtttaaccctctcaatgagaacaaaaaacgtccaaccggccca
gcggctgcccgaagaaaggtgggtcctcatggacagggcgctgctgtccacctgagccca
caagagcggcgaagggacataattcagaggttcatttcgcgatggcggaaagaagtgggc
gacgacatatttcctgcatttcggttgataattcctgaaaaagaccgagatcgtgccatg
tatggattgaaggagaaagccatcggaaaattgcttgtgaaagttatgaaaattgataaa
aactcggaggatggatttagcttgttgaactggaaggtgccaggccagagctttgcgagt
agaatggctggcgattttgctggtcgctgtttcgaagtcatatcaaagaggcctttgagg
accgaggtaggtgatatgacaatcgatgaagtcaatgagcagctagataaattgtccgca
gcctcgaaggaggatgagcaggtgcctattctcgcgtatttttaccgaaggatgaaccct
gaggagctgatgtggcttatacggattattctacggcaaatgaaagtcggtgccacagaa
cggacatttttcagcatctggcatccggatgcagaggcattgtttagtatctctagcagc
cttcggcgagtttgttggcaactttataatactgatgttcgtttggaaggggatgaaaca
aaagtcactcttatgcagtgttttcaaccccagctcgctcagtttcaaatgcaatctttt
gaacatatgatcagaaggatgaggttgactgaggacgacccaaccttttggattgaggaa
aagcttgacggggaacgcatacagcttcatatgaagccggacgattcaatacctggaggc
aagaggtttggcttctggtctcgaaaggccaaggaatatacgtatctgtacggcaatggg
ttgttggatgaaaatggggcactcacaaggcatcttcaagacgcttttgcagatggtgtt
cagagcatcattctagacggagagatgatcacatgggacccagagcacgacgcgattgtc
cctttcgggactcttaagactgccgcattggctgagcaaagaaacccattctcgacagga
cagcggcctctattccgtatatttgatatcctttacctgaacggccgaccgctcacaaga
tacaccctgaaggaccgcagaaaagcacttgaagcaagtgtgattcctgtacatcgccgt
tttgaaatccacacatatgatattggccacagtgccactgatatcgaccccttactccgg
aaggtagtcgcggaggcatctgaaggtcttgttcttaaaaatcccaactctccttatcga
ctaaacgaacgtcacgacgactggatgaaggttaagcccgagtacatgactgatttcggt
gaatctcttgattgcatagtaatcggcggatattacggttctggccgtcgaggtggcgcc
ctatcaagtttcctatgtggactaagggtcgatggctcgcactccaaaacgggtgatcac
cctacaaaatgctattcattttgcaaagtgggaggaggttttactgctgccgattatgcc
aatattcgccatcataccgatgggaagtggatggattgggatccaaaacgaccacccact
gaatacatcgagcttgctggaggtgacctacagtatgaacgccctgacgtatggataaag
cccgaggattcggttgttctatgtgtaaaggcctcatccgttacctcaactgaccagttt
cgccttggccttactgtgcgattcccgcgctttaaacgacttcgtatggataaggactgg
cgaagtgccttgtcgatccaggagtttatggaccttaagtcaaatgtcgaaagggaagtg
aaagaaaaggaattcaaggttgacgactctcgcaaagtgcggcacaggaaggctatcaaa
aagccgctgacgattgccggttatgacggaggcaagaagcttgaatatgttggtccttct
gggacattgtttgatggactcaatttttttatcatgaccgaatcagttcatcagccgaag
aaaaccaaggctcaactggaacaactcgtgaaagccaatggcggtaagatatatcagacg
aataatgttgctgaaaacacaatttgcatcgccgatcgcacagatcaggaggaagaaatt
gcagaacacgtagataaatattccgatagctatgcccgagatatcgatgcctcggaactc
aaaaagctcctcgacagcatgcacccagcccccgcgctgccaccttccagtctctccgag
ctagaatcccaacttgaatcccacagcctgaacgaacgaaaaccagcaaccccaacaata
tccaacacctcaacatgccccggctggcttttcaaaggactagtcatatactttgccatg
cccccgtccctgtcgaacgagggaaacggcaaaataccacacgttctgccacaacgtctc
tacctcgcttccaacctggtaaagttcgccggcggcgaagtcatcacggacgacgatggc
gacatgaaggatgcgcgcatcacgcatgttgtcgttgacagtaatccgcccggtgacaag
gcagctatggcagcggcggacgttgctggcatcaggagggcaatttcatcccgtgctggg
gttggtaaaaggattccgcatattgttggggttgagtgggtggaggagagttggggggag
cggacgttggttgatgaggaaagatttacaccaaagtga
DBGET
integrated database retrieval system
