Acidovorax sp. JS42: Ajs_2523
Help
Entry
Ajs_2523 CDS
T00455
Name
(GenBank) ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ajs
Acidovorax sp. JS42
Pathway
ajs03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ajs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Ajs_2523
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ajs03400
]
Ajs_2523
Enzymes [BR:
ajs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Ajs_2523
DNA repair and recombination proteins [BR:
ajs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Ajs_2523
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ABM42683
UniProt:
A0A9J9KN26
LinkDB
All DBs
Position
complement(2685104..2687617)
Genome browser
AA seq
837 aa
AA seq
DB search
MPRKDPLAVYKQKRNFAVTPEPADGGAQSQALQYVIQKHWASRLHYDLRLELDGTMKSWA
VPKGPSYDPADKRMAVQVEDHPISYNQFEGQIPPRQYGAGRVIIWDRGYWVPQGNPREDY
RKGKLKFEIHGHKLHGHWTLVRMHGRDDDKQPPWLLIKECDGLERAAEEFNVVDEMPDSV
ADQPPVAPPARAFAQRAGPAQIQPTAAAVPWTSAPTAPLPDQLSPQLATLVDGPPADLTQ
WLWELKFDGYRMLARVQRGKARLYTRNGNDWTARMPALAQALAALPLSSAWIDGEVLVLD
AQGVPDFQALQNAFDGRSTDALVFYAFDLPYAHGRDLRQMPLAERRALLRSVLQPASSDR
VRFSEAFEARPADLVASACRLGFEGVIGKRKDSVYASRRSTDWIKLKCSHRQEFVIGGYT
DPQGSRTGIGSLLLGVHDEGGALRYAGNVGTGFSERVLADLARRLGALRTQDSPFAQPRS
IPRKVHWVRPTLVAEVSFAEWTKEGKVRHAVFRGLRDDKPAAAIVHEEPAHLQGAAPSRA
ARVGGLQVTSPARVVDPSTGFTKLDLVRYYATVAPLMLPHLQGRPVSLLRAPQGLEGELF
FQKHLDTGALDGVSALSPDLDPGHPPLLEVATAQGLLSAAQMNTVEFHTWNARKDRIERP
NRITFDLDPGEGVPWAHVQEGAALVRLMLTELGLPSFLKTSGGKGLHVVVPIKRLHGWDA
VKDFSQAVVQHLARTLPQRFVAKSGPRNRVGKIFVDYLRNGFGATTACAWTARARPGMGV
SVPVAWQELDALTGGAHWTVQTVDRRLKTGNGPWSGYDEAAVSIGPAIKALGEKRHT
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atgccccgcaaagacccgctggcggtgtacaagcaaaagcgcaactttgccgtgacgcca
gagcccgcggacggcggagcgcagtcgcaggcgctgcagtacgtaatccagaagcactgg
gccagccgcctgcactatgacctgcgcctggagctggacggcaccatgaagagctgggcc
gtacccaagggccccagttacgacccggcggacaaacgcatggccgtgcaggtggaagac
cacccgatttcctacaaccaattcgaagggcagatcccgccgcgccaatacggcgcgggg
cgggtcatcatctgggaccgcggctattgggtaccgcagggcaatccgcgcgaagactac
cgcaaggggaagctcaagttcgagatccacggccacaaattgcacggccactggaccctg
gtgcgtatgcatggccgggacgacgataagcagcccccctggctgctgatcaaggagtgc
gacgggctagagcgtgcggccgaggagttcaacgtggtggacgaaatgcccgacagcgtg
gcagaccagccgccggttgcgccaccagcgcgcgcattcgctcagcgggccgggcccgcg
cagattcagcccacggcagcggcggtgccgtggacatccgcgcccacggcaccgctgcct
gaccagctatccccgcaacttgccacgctggtggacggaccgccggccgaccttacgcag
tggctgtgggagctcaagttcgacggctatcgcatgctggcccgggttcagcgcggcaag
gcacggctgtacacccgtaacggcaacgactggaccgccaggatgcccgccctggcgcaa
gcgctggccgccttgccgctgtcctctgcatggatcgacggcgaggtgctggtgctggac
gcccagggtgtccccgacttccaggcgctgcagaatgcgtttgacgggcgatcgaccgac
gcgctggtcttttatgccttcgatttgccttatgcgcacgggcgcgatctgaggcagatg
cccctcgctgaacggcgtgcgctgctgcgcagtgtgctgcaaccagcctcctcagaccgg
gtgcggttcagcgaagcgttcgaagcccggcccgcggacctggtggcctcggcctgccgg
ctgggatttgaaggggtgatcggcaagcgcaaggacagcgtgtatgcctcccgccgcagc
acggactggatcaagctcaagtgcagccatcggcaagagttcgtcatcggcggatacacc
gacccgcagggctcacgcacagggatcggttcactgctgctgggcgtgcatgacgagggc
ggtgccctgcgctatgccggcaacgtgggtacgggtttcagcgagcgcgtcctcgcggac
ctggcccggcggctgggcgctttgcgcacccaggacagcccgtttgcccagccgcgctcc
atcccccgcaaggtgcattgggtgaggcccacgctggtggcggaggtttccttcgccgaa
tggacgaaagaaggcaaggtgcgccacgccgtattccgcgggttgcgtgacgacaagccc
gccgccgccatcgtccacgaggagcctgcgcacctgcagggggctgcgcccagccgcgcc
gcgcgcgtgggagggctgcaggtgacaagtccggcgcgcgtggtggatccctccaccggg
ttcaccaagcttgatctggtgcggtactacgccacggtagcgcccctcatgttgccccac
ctgcaggggcggccggtgtccctgctgcgggcgccgcaaggtctggagggcgagcttttc
tttcaaaagcacctggacacgggggcattggacggggtgagtgcgctgtcacccgacctg
gatcctggccacccgccgctgctggaagtggccacggcgcagggcctgctgtcggccgcg
caaatgaacaccgtggagtttcacacatggaatgctcgcaaggaccggatcgagcggccc
aaccgcatcaccttcgacttggatccgggcgagggcgtgccgtgggcgcacgtgcaagag
ggcgcagcgctcgtgcgcttgatgctcaccgagctgggcctgccatcgttcctcaagacc
agcggcggcaaggggctgcatgtggtggtgcccatcaagcgactgcacggctgggatgcc
gtgaaagacttcagccaagccgtggtgcagcatctggcgcgcaccctgccgcagcgcttc
gtggccaagagcgggccccgcaaccgcgtgggaaagatctttgtggactacctgcgcaat
ggctttggcgccaccacggcctgtgcgtggacggcgcgcgcgcggccgggcatgggcgtg
tccgtgcccgtcgcctggcaggaactggacgcgctcacgggtggcgcccactggacggtg
cagaccgtggaccggcgcttgaagaccggcaatggcccctggtcaggctatgacgaggct
gccgtgtccatcgggccggcgatcaaggcgctcggggaaaaacgccacacatag
DBGET
integrated database retrieval system
