Acanthopagrus latus (yellowfin seabream): 119012664
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Entry
119012664 CDS
T08233
Symbol
exosc5
Name
(RefSeq) exosome complex component RRP46
KO
K12590
exosome complex component RRP46
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119012664 (exosc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alat03019
]
119012664 (exosc5)
Messenger RNA biogenesis [BR:
alat03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
119012664 (exosc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
119012664
NCBI-ProteinID:
XP_036942588
EnsemblRapid:
ENSALTG00010011798
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All DBs
Position
2:complement(4306210..4309212)
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AA seq
280 aa
AA seq
DB search
MIPLLYIDTNIDHLNYLKASVRGNSSFTASSFLRHQEGPKLGKHITSLPRDELVFRRDSS
MMEACGSSSVSLREFGCEQSLLSRPDGSASFVQGDTSVLAGVYGPAEVKVSKEIYDRATL
EVLIQPKVGLPSVRERSQEQCVRETCEASLLLTLHPRSSLTLVLQVLHDDGSLLSCFLNA
ACMALMDAGLPMCCLFCGVTCAIDANGQIITDPTAAQEKESRALMTFAIDSKECRVMMSS
TKGSFSVHELQQCIAVSQKASEKIFQFYRDSVKRRYSKTL
NT seq
843 nt
NT seq
+upstream
nt +downstream
nt
atgattccactcttatatatagatactaacatcgatcatttaaattatttaaaagcgtca
gttaggggaaattcaagttttaccgcctcctcattcctacgtcatcaggaagggcctaaa
ctaggaaaacatattacgtcactcccgcgcgacgagctagttttccgccgtgatagcagc
atgatggaggcgtgcggctcttctagcgtttctctgagagagtttggctgtgaacagagt
ttattgtctcggcctgacggttcagcgtccttcgtccaaggagacacgagtgtgttggct
ggagtgtacggaccagccgaggtcaaagtcagcaaggaaatctatgaccgagcaacactg
gaggtgctgattcagcccaaagttggactgcccagtgtgcgggaacgatcacaagagcaa
tgtgtgcgagagacgtgtgaggcatctctcctcttgacgcttcatcctcgctcctctctc
actcttgttcttcaggtgctccatgatgatggttcactcttatcctgctttttgaatgct
gcctgtatggctctgatggacgcaggcctgcccatgtgctgcctgttctgtggagtgacc
tgcgccatcgacgcaaacggtcagatcatcacagaccccactgcagctcaggagaaggaa
agtcgagctttgatgacatttgctattgacagtaaagaatgcagggtgatgatgtcatca
accaaaggatcattttcagttcatgagctgcagcagtgtatagctgtcagtcagaaagca
tcagagaagatcttccagttctacagagactccgtcaagcggcgatactccaaaaccctc
tga
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