Acanthopagrus latus (yellowfin seabream): 119014123
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Entry
119014123 CDS
T08233
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119014123
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
alat03041
]
119014123
03009 Ribosome biogenesis [BR:
alat03009
]
119014123
Enzymes [BR:
alat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119014123
Spliceosome [BR:
alat03041
]
Complex A
U1 snRNP components
U1 related factors
119014123
Complex B
119014123
Ribosome biogenesis [BR:
alat03009
]
Eukaryotic type
Pre-60S particles
Helicases
119014123
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
119014123
NCBI-ProteinID:
XP_036944941
EnsemblRapid:
ENSALTG00010021231
LinkDB
All DBs
Position
23:5805078..5810577
Genome browser
AA seq
623 aa
AA seq
DB search
MPGYSDRDRGRDRDRDRDRGYGGGPPRFGGNRGGGGGGGKFGNPGERLRKKQWNLDELPK
FEKNFYQQHPDVTRRSMQEVEQYRRAKTITVKGRECPNPIAKFHEASFPSYVMDVINKMN
WTEPTPIQAQGWPLALSGQDMVGIAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVL
APTRELAQQVQQVAAEYGRASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLE
AGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDF
LKEYVQINVGALQLSANHNILQIVDVCNDGEKENKLIRLLEEIMSEKENKTIIFVETKRR
CDDLTRRMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKFV
INFDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMRQASDLISVLREANQAINPKLLQ
MAEDRGGRSRGGRGGDYDRRDRYSSGRRDFGGFRDRDNGRGYDNGPNKAFGTNSQNGGGY
GGNNGSANGFSGGSYNGNGQSNFNSQAGAFSGQSNFQAPQFAPAKVGAQTGAGHPPFPFP
QAQAPQQHPPPLVPYPMPPQFSQ
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgccaggatattccgacagagatcgtggcagggacagggaccgtgacagagatagaggc
tatggcggtggccctcctcgctttggtggtaaccgtggaggaggaggtggtggaggaaag
ttcggcaatcccggtgaacgcctgcggaagaaacagtggaatctcgatgagctcccaaag
tttgagaaaaacttctatcaacagcatcccgacgttacccggaggtctatgcaagaagtt
gaacagtacagaagggccaaaaccatcacagtgaagggaagagaatgcccaaatcctatt
gcaaagttccacgaggccagcttcccatcctatgtgatggatgtgatcaacaaaatgaac
tggactgaaccaacacccattcaggcacagggctggcctttggctcttagtggccaggat
atggttggcattgcccagactgggtctggcaaaacgctctcttacttgttgccagcaatc
gtgcacatcaaccatcagcctttcctggaacgtggagatggacccatttgcttggtgctc
gcccctacccgtgagctggcacagcaggtacaacaggtagctgcagaatatggcagagct
tctcgcctcaagtccacctgtatctatggaggagcacccaaaggaccccagatccgtgac
ttggaaaggggtgttgagatctgcatcgccactccaggaaggcttatcgacttccttgaa
gcaggaaagacaaacctccgaaggtgcacttatcttgtgctggatgaggcagacagaatg
ctggacatgggcttcgagccacagattcggaaaattgtggaccaaatcagaccggaccgc
caaactctgatgtggagtgctacatggcccaaagaggttcgccagctggcagaagacttc
ctgaaggagtacgtccagatcaatgttggtgcgctgcagctcagtgctaaccacaacatc
ctgcagattgtagatgtctgcaacgacggagagaaggaaaacaaactcattcgtctgctt
gaggaaatcatgagtgagaaagagaacaagaccatcatctttgtggaaacaaagaggcgc
tgtgacgacctcaccaggaggatgagaagggatgggtggccagctatgggaatccatggt
gataaaagccaacaggaacgagactgggttctcaatgagttcaaatatggaaaggctcca
attctgattgctacagatgttgcctctagaggtctagatgttgaagacgtgaaatttgtc
atcaactttgactaccccaacaactctgaggactatatccaccgcattggcagaacggct
cgtagccaaaagacaggcacagcctacaccttcttcactcccaacaacatgaggcaggcc
agtgacctcatctctgtgctccgcgaggccaaccaggccatcaacccaaagctcctccag
atggcggaagacagaggaggtcgttcaaggggaggcagaggtggagactatgaccgtcgg
gatagatactcctctggaaggcgtgattttggtggttttagggacagggataatggtaga
ggttatgataatggaccaaacaaagcttttggcacaaattcacagaatggaggaggctat
gggggaaataatggcagcgccaatggcttcagcggaggcagctacaatggtaatggacag
tccaacttcaacagccaagcaggagcgttcagtggtcagagcaacttccaggccccacag
tttgctcccgctaaggttggagcacagactggtgctggtcatcccccattccccttcccc
caggcacaggctccacagcagcacccgccaccgctggtgccctaccccatgcctcctcag
ttctctcagtaa
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