Acanthopagrus latus (yellowfin seabream): 119020121
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Entry
119020121 CDS
T08233
Symbol
col27a1b
Name
(RefSeq) collagen alpha-1(XXVII) chain B isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
119020121 (col27a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
alat00536
]
119020121 (col27a1b)
Glycosaminoglycan binding proteins [BR:
alat00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119020121 (col27a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
119020121
NCBI-ProteinID:
XP_036955142
EnsemblRapid:
ENSALTG00010021794
LinkDB
All DBs
Position
5:complement(18510545..18580151)
Genome browser
AA seq
1705 aa
AA seq
DB search
METFCSALNRQFSGSFVAVLVKVLILWTILCCTCSLRLTQAQDVDVLQQLGLSGRRADGS
SISGARSIPNGVIPFKSGFILTPRARIQVPLRTVIPATYNSTNISLILSLTVHRINSAFL
FSVLSKKRKVQLGVQFVPGKVLVHVGHRSSVSFDYDVHDGQWHSLALDIQGHQVFFHTSC
GQKSVHADLHSKRQEALDAEGSFLLGKMNHNSVPFEGAICQFDIYPSAKAAHNYCDYIKK
QCREADTYRPMFPPLLPLFPMDPNITVTQITPLSLTEISEKAQRPTLALTDDSFRTTILV
PADRSPVLNKTSVYQTESAPKPDAVSVSPPVHPGLESPFEFPTQTATTSLRISVTPPNPK
PTSHDSARKNTFQGDTHNSQKPFVESMDLPSSTRPSEMKPNLHAAAAVTQGLPSNAYVPH
KQQLSTVASKKPEPKVTSVQDVKPTSLIPVTPAATDGFQTFDLEPTQFSLLAGPPGLKGE
PGPPGPQGLPGLPGKPGKRGPRGPPGPHGNPGRPGSPGVKGQKGDHGLSPGHAPKGQKGE
PGVIGPPGRPGQDGRKGQKGHPGPSGLPGEPGERGDDGSPGAKGYPGRQGLPGPVGKMGP
KGIRGHIGLPGLFGFPGPDGERGIPGVHGKKGKMGRPGFPGDFGERGPPGPDGNPGELGA
PGPFGVPGLIGDMGPVGFIGLTGPPGLKGVPGNPGEPGLKGDKGDFGISGEPGECGYQGD
KGNRGSPGLPGPRGNPGPQGKPGEKGPDGLPGPPGLEGFPGDIGPPGENGPEGPKGKQGI
RGLPGPRGIPGLQGDEGPVGPAGPAGLEGRPGRQGFPGLTGPDGLKGETGITGEVGKLGE
RGLPGFAGPAGETGIAGEKGDRGKTGAPGPQGELGPMGHTGIPGVTGPPGPQGIPGPPGS
RGAIGIRGPKGMMGLRGPDGPVGEKGSTGVKGPDGPPGKLGLPGEVGKFGEPGEAGPQGF
PGIQGPSGPPGAKGIAGEPGPAGPPGTIGPLGEMGLKGPPGKAGDRGLPGEPGEKGATGL
LGNIGEQGLLGQRGEPGIDGEAGTSGPDGAKGDKGDAGPEGTTGDRGEIGLKGKEGPPGP
PGLVGVRGPEGKPGKIGERGKQGEKGSKGHQGHLGETGPTGEQGEIGFVGQKGARGTTGP
VGAPGRMGQQGDPGLSGYEGHMGPQGPLGPPGPKGEKGEQGDDSKADGPTGPQGDRGPPG
DRGDRGEPGDPGHLGQIGFDGKRGEAGAPGLPGDPGPKGQPGPKGSKGDQGQGGKSGLRG
TSGTKGPPGPEGPPGPRGVVGREGLEGPPGMDGLPGKDGTKGVKGEQGEDGGEGLIGRPG
QQGNTGVTGLPGSQGSFGPKGERGLPGQTGAQGKKGSVGGMGLPGKQGDPGPKGQPGDTG
EQGFSGMFGLFGPKGPPGDVGPAGIQGPKGPRGLMGMEGALGPVGIIGPSGHPGPQGDKG
SRGETGLQGPRGSPGPHGPPGPPGLTTPALSLTNEALGAAFQVITDSHAALRPERMDMPM
LDQGTEILKTLQHLSTLIQSLKNPLGTRDNPARICRDLYNCEQRMYDGTYWIDPNLGCAA
DTIEVTCNFTSGGQTCLKPITVSKLEIGVGRIQMNFIHLLSTEAVQHITVHCLNTPVWAA
GPSLQPSYRAVSFKAWTGEKIQAGDLLEPLIPRDDCWIKDGRWHQTHFIFQTQDPNLLPI
VDVYNLPTTEPGARYHLEVGPVCFL
NT seq
5118 nt
NT seq
+upstream
nt +downstream
nt
atggaaacgttttgctccgctctcaacagacagttcagcgggagctttgttgcagtttta
gtgaaagttctgattctttggactatactctgttgcacctgctctctaaggctaacacag
gcacaagatgtggatgttctgcagcagctcgggctttctgggcgaagggcagatgggtct
tcaatatcaggcgctcgatccatccctaatggtgtcatcccgttcaagtctggattcatc
ctcaccccgagggcacgtatccaggtgcctttacgcaccgttatccctgccacctacaac
tccaccaatatctccctgatcctcagccttactgttcatcgcatcaacagtgcttttctt
ttctcagttctgtctaagaaaaggaaagtgcagctcggagtgcagttcgtaccaggcaag
gtcctggtgcacgtggggcacaggagctctgtgagttttgactatgatgtccacgatggc
cagtggcacagtctggccttggatatccaaggccaccaggtgttcttccacacgtcctgt
ggacagaaaagtgtacatgcagatttgcattctaaaagacaggaggctctggacgcagag
ggctcattcctgctgggcaaaatgaaccacaactctgtaccatttgaaggtgccatctgt
cagtttgacatttatccctctgctaaggcagctcataattattgtgattacattaagaaa
caatgcagagaagccgacacgtatcggcccatgtttccacccctgctacctctatttccc
atggacccaaacattactgtcactcaaataactccattgtctttgacggagatatcagaa
aaggcccagagacctactttggccttgactgatgatagcttcaggactaccatccttgtt
ccagctgaccgctcgccagtgttgaacaaaacatctgtgtatcagaccgagagtgctcca
aaacctgatgctgtgtctgtttctccacctgttcatccagggttggaaagtccatttgaa
tttccaactcagactgctactacatctcttaggatcagcgtgacaccaccaaaccccaaa
ccaacctcacatgacagtgccagaaagaacacattccaaggagatactcataattctcag
aaaccttttgtcgaaagtatggatttaccttcttccaccagaccatccgagatgaagcca
aacctccatgccgcagctgctgtcacacaggggttgccttcaaacgcctacgttccccat
aaacagcagttgagcacagtagcttcaaagaaacctgagccaaaagtgaccagtgtgcag
gatgttaaacccacctcgcttattccagtcactccagctgcaacagatggcttccaaaca
tttgacctggaaccgacccagttctcactgctggctggaccacctggactaaagggagaa
ccaggaccgccgggccctcaaggacttccagggttaccaggaaagcctggaaagaggggc
ccaaggggtcctcccggcccacatggaaaccctggtcgtcctggatctcctggagtgaag
ggacaaaaaggagatcatggattgtcccctggtcatgccccaaaaggacagaagggagag
cctggtgtcattggcccccctggacgacctggtcaagatggacgaaagggacaaaaaggt
catcccggtccttctggcctcccaggtgaacctggtgagaggggagatgatggaagccct
ggggccaaaggctatcctggcaggcagggtttacctgggcctgtagggaaaatgggacca
aaaggcatcaggggtcacattggcctccctgggctttttggctttcccggtcctgatggc
gagagaggaattcctggcgttcatgggaagaagggcaagatgggtaggccggggtttcct
ggtgactttggagagaggggacctcctggccctgatgggaacccaggtgaactaggagct
cctggcccatttggagtccctggtcttattggagacatgggccctgttggctttataggc
ttgacaggaccaccaggactcaagggagtgcctggaaacccgggggagccaggactgaaa
ggtgataagggggactttggcatatcaggagagccaggggagtgtggataccaaggtgac
aagggcaaccgtggctcacctgggttgccaggtcctcgtggaaatcctggaccgcagggc
aaacctggtgaaaagggccctgatggtttacctggccctcctggcctcgagggctttcca
ggtgacattggcccaccgggagaaaatggccctgagggacccaagggaaagcaagggata
cgaggtttgccaggtccaagaggaataccaggacttcagggtgatgagggaccagttggc
ccagctggacccgctggactcgagggcaggcctgggaggcagggattccctggactgaca
ggtccagatggactcaagggcgagactgggataactggcgaggtcggaaagcttggcgag
aggggactgcctggatttgctgggcctgccggagaaacgggaattgccggagaaaagggg
gatcgagggaaaacaggtgcccctgggccgcaaggtgaattggggccgatgggtcacact
ggaatacctggagtgactggaccacctggaccccaagggataccaggacctcctggttca
cggggagccatcggtattagaggacctaaaggcatgatgggtctgaggggtcctgatggt
ccagtgggggagaaagggtccactggagtaaagggccctgatggtccaccaggaaaattg
ggtctccccggagaggtggggaagtttggagagccaggcgaagctgggcctcagggattt
ccaggtattcaaggaccctcgggacctccaggagccaaaggaatagcaggagaaccagga
ccagcagggccaccaggaacgattgggccactgggggagatggggctgaaggggccacca
ggcaaggctggggacagaggactacctggtgaacctggagagaagggtgccactggtctt
cttggcaacatcggggagcagggtttgcttggccagagaggtgagccaggcattgatggg
gaagctggaacaagtggacctgatggagccaagggtgataaaggggatgctggtccggaa
ggcactacaggagacaggggtgaaattggtctgaaaggaaaggaaggacctccagggcct
cctggactggtgggtgtaaggggtccggagggtaaacctggcaaaattggtgaaagagga
aagcaaggagaaaaggggagcaagggtcaccaaggtcacctgggtgagactgggccaact
ggagagcagggagagatagggtttgtcgggcagaagggagcgagaggaaccaccgggcca
gtgggtgctccggggagaatgggccaacaaggagatccaggcttatccggttacgagggt
cacatgggaccgcagggccccctgggtcctccagggccaaaaggtgaaaagggtgaacag
ggagatgacagcaaggcagacggtcctacaggtcctcaaggtgacagaggtcctcctgga
gaccgaggagacagaggagagccaggtgaccctggacatcttggtcaaataggttttgat
ggaaagagaggtgaagctggtgccccagggcttcctggagatcctgggccaaagggacaa
ccaggaccgaaaggatccaaaggtgatcaaggtcagggaggaaaatcagggctgagaggc
acatctgggaccaaaggaccaccaggtccagagggtcctcctggcccacggggggttgtg
ggcagggagggactggagggcccacctggcatggatggactgcctggcaaagatggaact
aaaggggtcaagggggagcaaggagaggatggaggagagggtttaattggcagacctggg
caacagggcaacactggtgtgaccgggcttccaggaagtcaaggctccttcggaccaaag
ggtgagaggggtcttcccggccaaactggtgcacaaggaaaaaaaggctcagttggcgga
atgggattgccaggaaaacaaggagaccccggacccaaaggccaaccaggggatactggt
gaacaaggattttcagggatgtttggtctgtttggaccgaagggacccccaggagacgtt
ggcccagcagggatacagggaccaaaaggaccgcgaggtttgatgggtatggagggagct
ttgggccccgttggcatcatcggccccagcggtcatcctggaccccagggtgacaaagga
agtcgtggggagacggggctacaaggaccaaggggctctcctggcccccatggaccacct
ggaccaccaggtctcaccacacctgccctctcacttacaaatgaggctcttggtgctgcc
tttcaagtcattaccgattcccatgctgcactaaggccagagaggatggacatgcccatg
ttggaccagggcacagagatcctcaagaccttgcagcatctcagcactctgatccagagc
ctcaagaacccgctgggaacccgcgacaaccctgcacgaatctgccgagacctctacaac
tgtgaacagaggatgtacgatggcacttactggatcgacccaaacctcggctgtgctgct
gacactattgaggtgacgtgcaacttcaccagtggaggacagacttgcctgaaacctatc
accgtatccaagctggagataggagtgggtcgcatccagatgaacttcatccacctattg
agcaccgaggcggtgcagcacatcaccgtacactgcctcaacacacctgtgtgggcagca
gggccgtccctgcagccttcatacagggctgtgagcttcaaagcctggacgggggagaag
attcaggcaggtgacctcctggagccactcatacccagggacgactgctggatcaaagat
ggccgctggcatcagacccactttatcttccagacccaggacccaaacttactccccatt
gtggatgtgtacaacctaccaaccacagaacccggtgcacgctatcaccttgaggttgga
cccgtgtgcttcctatag
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integrated database retrieval system
