Acanthopagrus latus (yellowfin seabream): 119032678
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Entry
119032678 CDS
T08233
Symbol
col4a4
Name
(RefSeq) collagen alpha-4(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat04510
Focal adhesion
alat04512
ECM-receptor interaction
alat04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119032678 (col4a4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119032678 (col4a4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
119032678 (col4a4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
alat04147
]
119032678 (col4a4)
00536 Glycosaminoglycan binding proteins [BR:
alat00536
]
119032678 (col4a4)
Exosome [BR:
alat04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
119032678 (col4a4)
Glycosaminoglycan binding proteins [BR:
alat00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119032678 (col4a4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
119032678
NCBI-ProteinID:
XP_036978020
EnsemblRapid:
ENSALTG00010022087
LinkDB
All DBs
Position
2:complement(898131..929368)
Genome browser
AA seq
1661 aa
AA seq
DB search
MLLTSCSAPYSYTWLLCLLMVLTAPRPAALGGDESEPCAGRDCSNCQCFPAKGARGPPGP
LGRQGPQGPPGFPGPQGPPGEKGHRGDEGPIGAAGLKGDLGSVGVPGFPGLDGIPGHPGP
AGGPGFPGLDGCNGTRGERGKPGLPGEYGPDGEPGFSGPKGFPGDPAIYFIQYPGIPGDA
GLSGLPGLQGEPGLSGPTGDPGPTGEDGTNGLPGLPGSRGPPGEKGRSLPGQKGDEGDQG
LQGPPGPFEYVDPPEDLYIKGEKGPRGLKGVCGVQGLPGLDALPGIKGEKGILGFPGLRG
RTGNPGRPGERGVKGIRGSPGLPGLIGREGPKGRMGDPGPKGLPRAADITHIGDVGDSGA
SGLRGPPGDMGLMGIHGPKGVPGRSIPGPPGTVGLRGVPGFKGDKGDTGQVYEDGPTPGE
PGKKGQPGLRGLKGEPGIPGGYCLPGAPGKSGEPGVPGPPGAQGFRGFKGSRGDCACGPP
LELRGVPGPVGVLGSPGSPGVPGAPGLRGDKGLPGETGQRGEQGLGGFPGVKGFKGQRGD
FIVVDIKGGKGNRGQQGPSGRQGFPGRRGLDGPPGTPGDPGPQGESFSSFPGERGSPGLS
GPKGLQGFSGITGPGVVGAIGERGAPGEPGPPGIPGPPGVKGAKGDTLPCAPRNPGAPGQ
KGDSGNAGYTGFPGPPGFRGITGPDGTKGDKGGSGLPGSPGRQGPPGFVGDTGEEGPEGF
SYSGDPGAPGLPGSSGLRGPAGDSAVGFSGPIGFPGPTGSQGPKGVPGPPGSIGIQGAIG
LGGGPGPKGQTGQDGAPGLTGPVGPTPDFCDAGKPGASGLFGPQGPIGPPGFLGEKGEPG
AEGPPGFGPQGPEGKPGSPGFPGYTGLQGPSGPNGDPGLPGPSGLKGLMGPRGQEGWPGP
PGKTGAPGVPGRKGDIGPSGQDGAAGCEGPKGEKGCKGVQGPPGDTNIIPIKGDKGKPGP
PGINGFPGPRGAKGVRGATGKPGYPGINGAPGIVGLPGPAGPVGKPGPPGPPGQKGPAGF
VGFPGETGDPGDPGCPGEPGHPGFPGCTGPKGDKGDSVGCAGPTGEKGPTGDYGPPGPPG
PQGDPGTPGFIGAPGQKGCKGDPGYQGQLGEPGVIGPSGPSGRPGIPGLPGKAGADGPPG
LQGCQGLQGPPGPLGLHGLDGLKGVKGDMGTRGLGVPGPEGCKGLPGDKGPQGHPGYPGP
SQPGPKGPAGPPGPKGPTGGSGPPGNPGPNCKGPISGPQGHPGCAGPDGEPGCPGEMGDP
GRNPPVPGDEGDNGHTGFQGPKGSKGPRGPPGEPGYPGNPGEKGKRGSPGLMGLPGNRGP
DGYTGPSGPPGPKGCVGPAGPKGEKGRVSPCPTYAPAQKGPRGPAGPCGEVGHPGLQGEN
GRRGPKGKKGDIGSKGSEGDHGPPGPNGHKGQPGPQGEKGAIGDKGDPGPKGEKGDSGQD
VKLTSGFLLVKHSQTMEVPLCPHKMRVLWEGYSLLYLEGQEKAHTQDLGQAGSCMRVFST
MPFSSCNMGTCSYASRNDKSYWLSTTAAVPSIPVDGAAIRNYISRCVVCEAPSSPVALHS
QNSGIPPCPRGWVSLWDGYSFLMHTGAGDEGGGQSLTSSGSCLTDYRAQPFVECQGPRGT
CHYFTNIYSFWLTTSNNFSTTLTGSRQQRENIGRCNVCMRE
NT seq
4986 nt
NT seq
+upstream
nt +downstream
nt
atgctgctgacttcctgctccgccccctacagctacacctggctcttgtgcctcctgatg
gtcctgacagctcctcgtccagcagctctcgggggtgacgagtcggagccgtgcgccggt
cgcgactgttccaactgtcaatgttttccagccaaaggagcgaggggtcctccaggtcct
ctgggtcgacagggccctcaggggccaccaggctttccaggaccccaggggcctccagga
gagaagggccacagaggagatgaggggccgataggagcagcaggactgaaaggagacttg
ggaagtgtcggtgttccaggttttccaggtctagatggaatcccgggtcacccgggtcct
gctggaggacctggttttccaggtctggatggatgtaacggaaccagaggagagagagga
aaacccggccttccaggagaatatggacctgatggagaaccgggtttttcaggaccgaag
ggatttccaggagacccagcgatctacttcatacagtaccccggaatacctggagacgct
gggctgagcggacttcctggtctgcagggtgaacctggtctcagtggtccaactggagat
ccaggtcctacaggggaggacgggaccaacggtctccctggtctgcctggctcaaggggc
ccacctggagaaaaaggtcgatctcttcctggacagaaaggagacgagggggatcagggt
ctccaggggcctccagggccgtttgagtatgtcgaccctccagaagacctgtatatcaaa
ggagaaaagggtcctcgaggtttaaaaggcgtctgtggagttcagggactgccgggtttg
gatgctcttccaggcatcaaaggagagaaggggattctgggatttcctggactcagagga
cgtacaggtaaccctggacgtcctggagagagaggagtcaaggggattcgaggaagtccg
ggtctccctggtctgattggacgagaaggcccaaagggcaggatgggagatccaggtcct
aaaggcctccctcgggctgcagacatcacacacataggtgatgttggagactctggagct
tccggactgagaggccctccaggagacatgggactgatgggaatacatggtcccaaagga
gtccctggcagatccatacctggacctccgggtactgtgggactgaggggagtaccagga
ttcaaaggggacaaaggagatacgggtcaggtatatgaagatggacccacacctggagaa
cctggaaaaaaaggacaacctggactcagaggacttaaaggagaaccagggattccagga
ggttactgtctaccaggggctccaggaaagtctggagagccaggtgtaccagggccccca
ggtgcccagggcttccgagggttcaaaggtagtcgtggtgactgtgcttgtgggcctcct
cttgaactgaggggtgttccaggccctgtgggtgtcttgggatctccagggtctccagga
gtcccaggggctccggggctgagaggagataaaggtttgcctggagagacaggacaaaga
ggagagcagggtctgggtggatttccaggtgtcaaagggttcaaaggtcagaggggtgat
ttcattgtggtggatattaagggtggcaaaggaaacaggggccagcagggcccatcaggc
agacaaggatttccagggagaagaggactcgatggccccccagggacccctggtgacccc
ggcccccagggtgaaagtttctccagctttcctggagaaagaggctcaccaggactctca
gggccaaagggattacaaggattttcaggcattacagggccaggtgtggtcggagcaata
ggagagcgtggtgcccctggagaaccaggacctccaggaatccctggccctccaggagtg
aagggggctaaaggtgacacactgccctgtgcacccagaaaccctggagccccgggacag
aagggagacagtggaaacgcaggttacacaggttttccaggacctccaggtttccgtggc
attactggacctgatggaactaaaggagacaaaggaggttctggacttcctggatcgcct
ggacgacaaggacctcctggttttgttggagatactggagaagaaggacctgaaggattc
agttacagtggagatccaggcgctccaggtctcccaggctcttctgggctgaggggtcca
gcaggagactctgctgtgggattctcaggacccatcggcttcccaggaccaacgggctct
cagggacctaaaggagtccctggaccccctggcagtattggaatacaaggagccataggt
ctgggtggtggccccggaccaaagggacagacaggacaggatggggccccgggtttaact
ggcccagtggggcccacacctgacttctgtgatgctggaaaacctggtgccagtggccta
tttggccctcagggacccattggacccccaggttttttgggggagaaaggtgagcctggg
gcagagggtcctccaggttttggccctcaaggcccagaaggtaaaccaggctctccaggt
ttcccagggtacacagggctacagggcccctctggcccaaatggagacccaggactacca
ggacccagtggtcttaaaggtctgatgggaccccggggccaggagggctggccaggacca
cctggaaagactggggctcctggagtccctgggcggaagggggacatagggcccagtgga
caagatggagctgcaggatgtgaaggtccaaaaggagagaaaggatgtaaaggggtccag
gggcctccaggagataccaacattatccccatcaaaggagacaaagggaaaccaggaccc
ccaggcatcaacggctttcctggaccacgaggagctaaaggtgtacgaggagctactggt
aagccagggtatccaggcatcaatggagcccctggcatcgtaggtctaccaggacccgcc
gggcctgtcggcaaaccaggacctccaggaccacctggtcaaaaaggacctgctggattt
gttggcttccctggagagacaggagatccaggtgacccaggatgtccgggggaacctgga
catcccggtttcccaggatgtactggacctaaaggtgataaaggagactctgtcggctgt
gcgggtccaactggagagaaggggcctactggagattacgggcctccaggaccacctgga
cctcaaggtgatccaggaacacccggattcattggtgctccaggacagaaaggatgcaaa
ggagatccaggctatcaggggcaactgggtgaaccaggtgtgatcggtccctcaggtccc
agtgggcgcccaggtattccaggtcttcctggtaaagcaggggctgatggtcctccagga
ctgcagggctgccagggtctccaaggtcctcctggaccgctgggacttcacggactagat
ggactgaaaggagtaaagggggacatgggcaccagaggtctgggtgtgccaggtcctgaa
ggttgtaaaggtcttccaggagataagggtcctcaaggtcatccaggataccctggccca
tcccagcctggaccaaaaggacccgctggcccccctggacccaaaggccccacaggtggt
agtggacctccaggtaatcctggaccaaactgtaagggtccaatttcagggcctcaagga
catcctggttgtgctggacctgatggagaaccagggtgtcctggtgagatgggggatcca
ggtcggaatcctccagtacctggagatgaaggggacaacgggcacactgggttccagggg
cccaaagggtcaaagggacctagggggcctccaggagagccagggtaccctggaaatcca
ggagagaaaggtaagcgggggtctccaggtctgatgggactacctggtaatcggggtcct
gacggttataccggtcccagtgggcctccaggaccaaaaggatgtgttggaccagctggt
ccaaagggggagaagggacgagtctccccctgcccaacttatgcccctgcccaaaagggc
cccagaggacctgctggcccctgtggagaggttggacatcctgggctgcagggagaaaac
ggccgtagaggacccaaaggcaagaaaggggacatcggttctaaaggatcagaaggcgat
cacggtcccccaggtccaaatggacacaaaggacaaccaggcccacagggggagaaagga
gcaataggcgacaaaggtgatcctggtccaaagggtgagaagggtgacagtggacaagat
gtaaaattgacctccggtttcctgttggtaaaacacagccaaacgatggaggttcccctc
tgtccacacaagatgagggtcctgtgggaaggatacagtttgctgtatctggaggggcag
gagaaggctcacactcaggatctgggtcaggcggggtcgtgtatgcgggtcttctccacc
atgccgttctcttcctgtaacatgggaacctgctcttatgccagtcggaacgacaaatcc
tattggctgtcgacgacggcagctgtccccagtataccggtggacggagctgctattaga
aattacatcagccgctgtgtggtgtgtgaagcgccctcttcacccgtcgcactgcacagc
cagaactccggaatcccaccctgcccccgcggctgggtgagcctgtgggacggatactcc
ttcctcatgcatacaggtgcaggtgacgagggcggcggccagtctctgacatcatcaggt
agctgtctgacagactatagggcccagcccttcgtggagtgtcaggggccccgaggaacc
tgccactacttcaccaacatctatagcttctggctgaccacctccaacaacttctccacc
acgctgactgggagccggcagcagagggagaacattgggaggtgcaatgtctgcatgagg
gagtga
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integrated database retrieval system
