Austrofundulus limnaeus (annual killifish): 106513742
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Entry
106513742 CDS
T06063
Name
(RefSeq) collagen alpha-1(XIII) chain-like
KO
K16617
collagen type XIII alpha
Organism
alim
Austrofundulus limnaeus (annual killifish)
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
alim00536
]
106513742
Glycosaminoglycan binding proteins [BR:
alim00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106513742
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
106513742
NCBI-ProteinID:
XP_013858176
UniProt:
A0A2I4ARS3
LinkDB
All DBs
Position
Unknown
AA seq
696 aa
AA seq
DB search
MFRMEEEQKWKLGEERRRTTRADPSEQPPRTSWTHVSGLTVCFAMCVACLGVCVFVIVRS
SEMRSRIASLEQQQLSAWMLAQEQVEPLILGRLDQILEEKLAARLPKSREVREVLHGCLC
PPGPPGPPGRAGFPGDKGSMGIPGRMGLKGQAGEKGAPGEPGLSIIGPRGPPGQPGTRGF
PGFPGPIGLDGKPGLNGLKGDLGPRGPKGNPGEPGPKGEKGVCGDSTHRKRRIVQTCVGQ
MASQGEPGVQGPPGPPGPPGPAGTPGLDGASGPPGKPGEPGKPGKDPRLLPGLKGEPGVP
GQKGDRGDIGPAGPEGSKGDKGEEGIKGDEGKRGFPGERGEKGDSGFPGALGLKGQAGIP
GSPGIPGIPGKRGYRGEKGEPGTTAKGIKGEPGSPGLPGLTGSKGEKGDKGDAGLQGPAG
PRGPSGPTGEPGRADILNNENDIRNIRLMGPPGLPGPPGSPGVPGTKGEVGLPGPPGLDG
EKGPRGKPGEPGPPGPAGPEGTRGESGVMGYPGPKGEKGDMGPSGSPGPKGESGGGGRSE
MMYGPPGPPGPSGPVGPAGPQGPSGSKGEPGMATKGEKGDIGQKGEKGDRGHLGLPGLIG
PAGVPGPAGPKGERGEKGDSGLPGPTGPHGIPGLEGPQGLKGNRGERGKKGNRGAKGDKG
DQGAPGLDAPCPLGDDGLPVPGCWNKGQHPFQLAKK
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atgtttagaatggaagaggarcagaagtggaaacttggtgaggagaggaggaggacgacg
cgcgcggatccttccgaacagcccccgcggacgagctggacgcacgtgtccgggctgacg
gtttgcttcgcgatgtgcgtcgcgtgcctcggagtttgcgtgtttgtgatcgtgcggagc
tcggagatgcgctcccggatcgcgagtctggagcagcagcagctctccgcctggatgttg
gctcaggagcaggtggagcctctgattctggggcgactggaccagatcctggaggagaag
cttgcagcacggctgccgaagtcccgggaggtgagagaagttctccacggctgcctgtgt
ccccccggacctccaggtcctcctggacgagctggctttccgggtgacaaaggaagtatg
ggaattcctggaagaatgggcttaaaaggacaagcaggtgagaagggtgcaccaggtgaa
cctggtctgtccatcattggaccaagaggtcctcctggacaaccgggtacaagaggattt
ccaggctttccaggtcctattgggttggatggcaaaccagggctaaatggactaaaggga
gacttgggtcctcgtggtcctaaaggaaacccaggagaaccaggacccaaaggggagaag
ggtgtatgtggagactcaacrcaccggaagcggcgtattgtacagacctgtgttggacag
atggcctcacagggtgaacctggagtgcagggacccccagggcctcctggaccccctgga
cctgcaggtactccaggtcttgatggagctagtggcccaccgggtaaaccaggggagcct
ggcaaaccaggaaaagacccaaggctcttacctggactgaagggggaaccaggtgttcca
ggacaaaagggtgacagaggcgatatcggcccagcaggtcctgaaggctcaaagggagat
aaaggagaagaaggaattaagggggatgaagggaaaaggggtttcccaggagagagggga
gagaagggtgactcaggtttcccaggtgctcttgggttaaagggccaggctggaatccct
ggttctcctggtattcctggcattcctggcaaaaggggctatcggggggagaaaggagag
ccgggaacaactgctaaaggaatcaaaggagagccgggttcacctggactgccaggacta
acgggatccaagggtgagaaaggagataagggagatgcaggtcttcaaggaccagctgga
ccaagaggtccttcaggcccaactggagagccaggaagagctgacatcctgaacaatgaa
aacgatatccgcaacatacgtctgatgggtccccctggattacctggacctccaggatca
cctggagtccctggcacaaaaggtgaagttggtctaccaggtcctccaggactagatgga
gaaaagggacccagaggaaagcctggagagcccggtcctccaggtccagctggtccagaa
ggtaccagaggagagagtggcgtcatgggctatccaggacccaagggagaaaaaggagac
atgggtccatctggatcacctggccctaaaggtgaatctggaggtggaggaaggtcagaa
atgatgtatggtcctcctgggcctccaggaccctctggaccagttggccccgcagggcct
caagggccatcagggtctaagggtgagccaggcatggctaccaaaggagaaaagggagac
ataggtcagaaaggtgaaaaaggagacagaggccatcttggactacctggtctaatagga
ccagcaggtgtgccagggcccgctggaccaaagggagagagaggtgaaaagggagattca
ggattaccaggaccaacagggccacatggcatccctggtttagaaggaccacaaggactc
aaaggaaatcggggagagaggggcaagaaaggcaacaggggggccaaaggggataaagga
gaccaaggagcacctggattagatgccccctgtccgttgggtgatgatggattacctgta
ccaggatgttggaacaaaggtcaacatcctttccagctggctaagaagtag
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