Austrofundulus limnaeus (annual killifish): 106516901
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Entry
106516901 CDS
T06063
Name
(RefSeq) collagen alpha-1(XI) chain-like
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
106516901
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
alim00536
]
106516901
Glycosaminoglycan binding proteins [BR:
alim00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106516901
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
106516901
NCBI-ProteinID:
XP_013862944
UniProt:
A0A2I4B5C3
LinkDB
All DBs
Position
Unknown
AA seq
1816 aa
AA seq
DB search
MEMQRWTISWKTKRRQWDSTLAAVITLILTLQTSIVKAAEPVDVLKALDFKSSPEGVQKT
PGFCTVRRGSKPDIAYRVGKTTQISAPTKQLFPGGIFPEDFSILFTIKPKAGLQSFLLSV
YNHQGIQQLGVEVGRTPVFLYEDQHGKPAPEEYPLFRSINLADGKWHRVAISVEKKSITI
IVDCKKKVTKPLRRSDQAVINTDGITVFGTRILDDEVFEGDIQQLLIVADPRAAYDYCEH
YSPDCETPTHHDTPQAQEPEDEYNTYSYGDAYDYDYGEEKITTDAPPTAGAKTETNEGGD
FYNGEYEYSVVDGSQPATPTKSASQGQNYEAELEYDYITGAEEVGADPTPPVKAAVPDDT
QEKVDSTTDLYEFKEYDLKEYDKELVEKPFDYGDYGDYGPTDAKPTTEKYEDFGPGVPAK
TDFTESSMGQSYLGQKGEKGEPAVIEPGMLLEGPQGAPGPAGVPGTPGSQGSPGPPGDPG
ERGPPGRPGIPGSDGVPGPPGTVLMLPFRAGGEAHKGPVVTAQEAQAQAILSQARLTMRG
PPGPAGLTGRSGPLGPPGAPGLKGDSGDSGPQGPRGLQGPTGPPGKAGKRGRNGADGARG
MPGESGAKGDRGFDGLPGLPGEKGHRGEQGSTGPPGSPGEDGPRGEDGQVGQRGLAGESG
PRGLLGPRGSPGPPGPPGLNGLDGQAGPKGNMGPQGEPGPPGQQGLPGPHGLIGPQGPIG
PPGEKGPQGKQGLAGLAGADGPPGHPGKEGPPGEKGTVGFPGPMGSIGYPGPRGVKGAEG
IRGLKGDKGEKGEDGFPGFKGDMGIKGDKGEVGVQGPRGEDGPEGPKGKAGPGGESGPLG
LAGEKGKLGVPGLPGYPGRQGPKGSNGFPGFPGANGEKGARGIAGKSGPRGQRGPTGPRG
GRGARGPTGKPGAKGTSGSDGPPGPPGERGPQGPQGPVGFPGPKGPNGPPGKDGLPGHPG
QRGETGFQGKTGPPGPGGVVGPQGPTGETGPSGERGHPGSPGPPGEQGLPGAAGKEGGKG
DPGPQGHGGKVGPPGLRGFQGTRGLPGAMGPAGLKGGEGPQGPPGPIGSPGERGPAGPGG
PIGQTGRNGPQGPPGPAGEKGAPGEKGPVGPAGRDGIQGPVGLPGPAGPQGPPGEDGDKG
EVGGPGQKGSKGDKGESGPPGPTGVQGVVGAPGPAGSDGEAGPRGQQGMFGQKGDEGPRG
FPGLPGPVGLQGLPGPPGEKGENGDVGQMGPPGPPGPRGPQGPSGADGAQGPPGGIGSAG
AVGEKGETGEAGNPGPPGEPGIGGLRGEIGEKGETGPPGAAGPAGARGPPGDDGPKGNPG
PVGFPGDPGPPGEPGAAGLDGLAGDKGDDGEAGQPGPPGPSGEAGVPGPPGKRGPVGQAG
QEGRQGEKGSKGEAGAEGPVGKTGPVGPQGPPGKAGAEGLRGIPGPVGEQGLPGASGQDG
PPGPIGPPGLPGMKGDSGSKGEKGHPGLIGLIGPPGEPGEKGDRGLPGPQGAGGGKGDPG
IGGGQGPLGPPGPPGLPGSQGQKGSKGSVGSPGQKGDPGVIGVPGPPGPPGDMIQPLPFQ
QSSKKSRRQADVQGDEALVDYGTEGMEDVFGSLNNLKQDIERMKFPMGTQDNPARTCNDL
HLSQPDFPDGEYWIDPNQGCIGDSIKVFCNFTAGGETCIYPDKKSTGVRMSNWPKESPGS
WFSEFKRGKILNYVDVAENTISPVQMTFLKLLSSSARQNFTYNCHQSVAWYDAKADGYDK
ALRFLGSNDEEMSYDNNPFIKPLMDSCSLKQGYSRTVLEINTPRIDQLPVIDVMFNDFGG
TNQRFGFEVGSVCFLG
NT seq
5451 nt
NT seq
+upstream
nt +downstream
nt
atggagatgcaaagatggactatcagctggaaaacgaaaaggcgtcaatgggattcaacg
ttagccgctgtgatcacgttaattttaacccttcaaacttcaattgttaaagcagctgaa
ccagtggatgtactaaaagcgttagactttaagagctctcctgaaggagtccagaaaact
cccggtttctgcacagtccgacgaggatccaaacctgacatagcttacagagtggggaaa
acgactcaaatcagcgctccaaccaaacagctcttcccaggagggattttccctgaagat
ttctctattctttttaccatcaagccgaaggctggactgcagtccttccttttgtctgtc
tacaaccaccaaggcatccagcagctcggcgtggaggtgggccgcacccccgtcttcctg
tacgaggaccagcacggcaaacccgccccagaggagtaccctttgttccgctccatcaac
cttgctgatggcaaatggcatcgagttgctatcagcgttgagaagaagagcattaccatc
atcgtagactgtaagaagaaggtgaccaagccactgagaagaagtgaccaagctgtgatc
aacacggatggcattactgtttttggtaccagaatcctggatgatgaggtctttgagggt
gacatccagcagctgctgattgtggcagaccccagggcagcctacgactactgtgaacac
tacagccctgactgtgaaacacccacccatcacgacaccccacaggctcaggaaccagag
gacgagtacaatacctacagttatggtgacgcctatgattacgattatggtgaagaaaag
ataaccactgacgctcctccaacagctggagcgaagactgagacaaatgagggtggagat
ttttacaacggtgagtatgaatactccgtagtggatggaagtcagcctgcaactccaacc
aagtctgccagtcaaggccagaattatgaagcagaactggagtatgactacatcaccggt
gcagaggaggtgggtgcggaccccactcctcccgtgaaagctgccgtccctgacgacacc
caagaaaaagtggattctactactgacctgtacgagtttaaggaatacgacttgaaagaa
tacgataaggagcttgtggagaaaccattcgactacggggattacggagattacggtccc
accgatgccaagcccacaactgagaaatacgaggactttggccccggtgttccagcaaag
acagacttcacggagagcagtatgggtcagagttatttgggacaaaaaggagaaaagggt
gaacctgcagtcattgaacctgggatgcttttagaaggaccccaaggagcccctggccca
gcaggtgttcctggtacccctggatcacaaggatccccaggtcccccaggagatccgggt
gagaggggtcctccagggcgtcctggtattcctggctcagacggtgtccctgggcctcca
ggtaccgttctgatgctcccattccgtgctggcggtgaggcacataaaggacctgtggtt
acagcccaagaagctcaggctcaggccatcctgtctcaagctagattaacaatgagaggt
cctcctggacctgctggtctgacaggaagatccggtcctctgggacctcctggggctcct
ggactcaaaggtgacagtggtgattctgggccacagggacccagaggtcttcaaggtcca
acaggtccaccaggaaaagcaggaaagaggggtcgaaacggagctgacggagcacgaggg
atgccaggagagtcaggggccaagggtgatcgaggttttgatggactccctggtcttcca
ggagaaaagggtcataggggagaacaaggctctacgggccctccagggtctccaggagag
gatggcccaagaggtgaagatggccaggttgggcagagaggtttggcaggagagagtggt
cctagaggtttgcttggccccagagggtccccaggtcctccaggaccgcctggtcttaat
ggactcgacggacaggctggtcctaaaggaaacatgggtccacaaggagagccaggacct
cctgggcaacagggcctacctggtccacatggtcttattggtcctcaaggtccaattggg
cctcctggtgaaaaaggacctcaggggaaacaaggtctggctggacttgctggtgctgat
ggtcctcctggtcaccctggcaaagagggtcctcctggcgagaaaggaacagtcggtttt
cctggtccaatgggatccatcggctatccgggtcctcgtggtgtaaaaggtgccgaggga
atcagaggccttaaaggtgacaaaggagaaaagggagaagatggatttcctgggttcaaa
ggtgacatgggcatcaagggggacaagggtgaggttggtgtacaaggaccaagaggagaa
gatggccctgaaggtcccaagggaaaggcaggaccaggtggagagtcaggtcctttgggt
ttagctggagaaaaggggaaactcggagtccctggattgcctggctaccctggaagacaa
ggccctaagggctccaacggcttcccaggattccccggggcaaatggtgaaaaaggagcg
aggggaatcgctggtaaatctggccccagaggacaacgtggtccaactggtccacgtggg
ggacgaggagctagaggaccaacagggaagccaggtgcaaaaggcacctcaggcagtgat
ggacctcctggcccacctggagagcggggacctcaaggaccgcagggtcctgtcggtttc
cctggacccaaaggaccaaatggtccgccagggaaagacgggctgcctggtcaccccgga
cagagaggagaaactggcttccaaggaaagactggcccccctggacctggaggagtggtg
ggacctcagggaccaactggagagacaggaccaagcggggagcgaggacacccagggtcc
cctggtccacctggagagcaaggtttaccgggggctgcaggaaaagagggtggaaaaggt
gatccaggtccacagggtcatggtggcaaagttggacctcctggtcttagaggtttccaa
gggaccagaggtcttccaggagccatgggtccagctggcttaaagggaggagaaggacct
cagggtccccccggccccatcggttctccgggtgaacgaggccccgctggtcctggaggt
cccattggtcagacaggacgaaatggcccacaaggacctcctggccctgctggagaaaag
ggagctcctggagagaaaggtcccgtggggccagctggccgtgatggcattcaaggtcca
gtaggtcttcctggtccagctggtcctcaaggtccccctggagaggacggtgacaagggt
gaagttggtggaccgggacagaagggaagcaaaggagacaagggtgaatctggtccacca
ggcccgactggtgtccagggtgtggttggagctcctggtcctgctggcagcgacggcgaa
gccgggccaagaggacagcaggggatgttcggccagaaaggagacgaaggacccagaggg
tttccggggctaccgggacccgtcggactgcagggtttgcctggccctcctggtgagaag
ggagaaaatggagacgtcggacaaatgggtccaccaggtcctcctggtcccagaggtcca
cagggccccagcggagctgatggtgcacaaggtcctcctggaggtattggttcagcggga
gccgttggtgagaagggagaaactggtgaggctggcaacccgggaccacctggagagcct
ggcattggaggtcttcgaggagagatcggtgagaaaggagaaacgggcccacctggagct
gctggacccgctggtgctagaggaccccctggagatgatggtcccaaaggaaaccctggt
ccagtcggcttccctggagaccctggtccccccggtgagcctggtgctgctggtctagat
ggtttagctggtgataaaggagatgatggagaggctggacaaccaggccctccaggtcca
tccggtgaagctggagtaccaggaccccctggcaaaaggggacctgttggacaagcgggt
caggagggcagacaaggagaaaaaggctccaagggagaagcgggagcagagggacctgtt
ggaaaaactggacctgtgggacctcagggaccccctggaaaagctggtgctgagggtctt
cgtggcatccctgggcctgttggtgaacaaggacttcctggtgcttctggtcaagacggt
cctcctggacctattggacctcctggactcccaggcatgaaaggtgactctggatccaaa
ggagagaagggtcaccctggcctcattggtctgattggacctcctggtgaacccggagag
aagggagacaggggtctgcctggacctcaaggagctggcggtggaaagggagatcctggc
attggaggaggacaaggtcctctcggccctcctggtcctcctggacttcctggttctcaa
ggacagaaaggatctaagggatcagttggttcacctggtcagaagggagaccctggtgtg
attggggtacctggaccacctggaccacctggcgatatgatccagccacttcccttccaa
cagtctagcaaaaagagcaggcggcaggctgacgtgcaaggagacgaggcgctggtagac
tacggcacggagggaatggaagacgtctttggatcgctcaacaacctcaaacaggacatc
gagcgcatgaaattccccatgggcactcaagacaaccctgctaggacctgcaacgacctg
cacctcagccagcccgacttcccagacggtgaatactggatcgatccgaaccagggctgc
atcggagactccatcaaagtgttctgtaacttcacagcaggtggagaaacgtgcatttac
ccagacaagaaatccacaggagttagaatgtccaactggcccaaggagtctcctggttct
tggttcagtgaattcaaacgaggcaaaattttgaactatgtcgacgtggcggagaacacc
atcagcccggtgcagatgaccttcctgaagctgctgagctcttcggctcggcagaacttc
acctacaactgccatcagtcggtggcctggtacgacgccaaggctgacggctacgacaag
gcgctgcgcttcctgggctccaacgatgaggaaatgtcttacgacaataatcctttcatc
aagccgctgatggacagctgctcgctgaagcagggttattcaaggactgtgttggagatt
aacactccccgcattgatcagttacccgtcatcgacgtcatgtttaatgactttgggggg
accaaccagaggtttggctttgaggtcggctccgtgtgtttccttggctag
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integrated database retrieval system
