Austrofundulus limnaeus (annual killifish): 106517955
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Entry
106517955 CDS
T06063
Symbol
col7a1
Name
(RefSeq) collagen alpha-1(VII) chain
KO
K16628
collagen type VII alpha
Organism
alim
Austrofundulus limnaeus (annual killifish)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
fn3
VWA
Kunitz_BPTI
VWA_2
Pur_ac_phosph_N
Interfer-bind
DUF4992
Motif
Other DBs
NCBI-GeneID:
106517955
NCBI-ProteinID:
XP_013864464
UniProt:
A0A2I4B9M5
LinkDB
All DBs
Position
Unknown
AA seq
3089 aa
AA seq
DB search
MWRWMLTVLSLLSFMKHTEAQGRCNNVQAADIVFLIDGSSSIGRSNFLQVKGFMAGIVKP
FASAVSASGIRFGAVQYSDTSRVEFTFXTYLNGTELIKAVQDISYKGGNTRTGAGLKFVS
DNFFNPASLRDVPKVNILITDGKSQDRVQEPAQKLRSQGVKVFAVGIKSADRNELAQISS
QPSNDFTSFVGDFKLLNTLLPLVGPRVCSVAGGVYVSDEAFSGPSNIQFTGQTTDSLRFR
WNPAGGPVSGYVIQYVPLSGLGQPINAELRQETVSATQRTFTVQELRSGTDYLVTIIAQY
PNSVGESTSAKQRTRSLPGVSSLSLVQAGYFSLSVGWDPPSSLVQGYRLTYGPRGQPAAQ
LLELSLPADATSATLESLQPDTEYVISLYALFPRNSATPSVLNAQTLRLEAVQQLSVETV
SEGSVRVRWRRIAGVQAYRLVWGAFTGQTFETVELAGDSEFYTLSRLQPETEYIVTVLPL
YEQNTEGPGATARFKIEREEQQVLRAATTEPSSIRLNWRLIRSAQGYRLEWREGQVLFAP
SGGAVQSLSFPRSTTSYELTGLRPQTEYVFTLYTLFEGREVATPVSTEDKEAQPVGSVSN
LKVVETLXSTVRLGWTGVAGATQYRIIILNTDDGTEKLQTIPGDQTTFDLRDLIVGVSYG
ISVTALVGENEGEAVTVYIKPEQQIGRVTSLRVTNVNSRRIRIAWDRVTGATGYRVTWRQ
DEEAERSRLLGAEATAFTIDGLDPDEELVIGVAAIVDQRAGEVVTLSTRTNPASGTLSGF
RVTDISSQRIRIAWSLVSRATGYKITWRSDDGIETTSTVASDVSSYTIDRLQPNSAYTVQ
VSALTGSREGTPSILNVRTEPDQSVVGTVTSLQVLETRGEVVRVTWVGVQGATAYRISWR
RTDGGVERSQLVGGDVSXVDLDQLDPGVQYEVQVKALVQNREGTPVSVRVTTPGYNTPPP
LLPTTTLRVTEVNQESVRLGWALIPGTTGYILHWKEETDVGQGLSVSLPPSSSSYLVTGL
RLGRQYRFTIQPTFPSGVAAETFVDERTVCLGGRLDVVFLVPASTDRIGLERPLRDLLTS
AAGSLATIGPRDSQVGVVVYGFRPKIWFLLNRHIRSDTLLQEIQSTPFDESPGNNIGEAV
TFTRQYLLTPSAGRRPRVPGAVVIIADRKSVDNLTLAANSLRTTGVTVLAVAVDQADTEE
LRRAVTDRSTQNILYTRDSAQMNTLHADLADLLCGIARIPEVSPGSDQCTVQCPQGEKGE
RGERGERGRDGADGRKGEPGRDGLPGREGPRGPEGRPGPPGQPJSFDPSGIKGVKGERGF
PGVDGNPGLPGRPGAPGNAGVPGSQGLPGVRGSSGEPGGQGPPGLKGDKGERGEPGSAIS
GGGLPGRKGEPGIPGIPGTPGRPGSDGAKGSLGVPGTPGQDGRPGIPGTPGVSIKGDKGS
TGERGPPGVGSGVAVKGEKGVPGIPGTLGTPGARGPSGPQGSKGEKGDEGVGLPGLPGKQ
GDPGDRGLRGPAGELGSKGDRGQPGEPGTRGDRGERGPAGETGEKGDAGKPGIPGSPGLR
GLPGPSGVSGEKGNEGARGEPGRSVQGLPGKKGDQGEQGLPGSEGQRGEKGEPGQRGEKG
SPGGGSDEAGTKGDPGDRGPPGLSGRPGAKGDSGEPGERGENGRPGLPGKPGLPGKQGEK
GDKGDEGTPGEPGLSGKPGERGLRGLAGQPGRPGEKGDMGDPGEHGRNGSPGPAGPRGEK
GELGPEGPPGPPGKLADTQALLKGERGEKGDAGDPGEHGSKGQKGEAGTPGAPGLRGSEG
PRGPAGTKGDAGERGAPGEKGDRGASGLDGRPGLDGKPGSSGPPGLRGDPGKTGDSGRDG
LPGLRGEQGPQGPIGPPGNPGIPGKAGEDGKTGPPGKTGDDGVPGEDGRKGDKGEAGAAG
RDGRDGEKGDRGPAGTAGPSGPTGPPGLPGSIGPPGQVVYVKGVEAAPIPGPQGPPGTPG
VPGIPGAGGARGERGPPGPKGDIGDPGEDGAPGKPGTAVDVQKALASLGIQVADLKVVME
KKDNILSPSVQKAEKGEKGDRGEAGPRGPSGSDGARGFPGDRGIKGDQGERGQMGPAGLP
GRAIGERGPEGPPGPAGEPGKPGIPGVPGRAGELGEAGRPGEKGERGDKGDKGDAGLVGL
AGPAGPQGEKGAPGESVLLGTPGLRGPPGENGEPGPTGPLGPKGERGFAGPRGEKGDRGE
VGEKGRGGSPGEPGQPGKSGQDGKPGLPGFPGVLGRPGNPGENGIRGPTGPMGPTGLPGP
MGLKGSQGEPGVGVQGPPGAQGSTGLPGPPGPPGAVGPQGPPGLSGQVGEAGKPGVPGRD
GVPGKEGIPGLPGKQGIAGPPGQHGLKGEQGDSGPPGKAVAGPIGPKGERGPPGVTLPGI
AGERGVPGERGDKGDRGSAGIKGDRGVAGEPGERGEEGQQGSAGPKGDKGEKGIGPAGPP
GRVGPPGLKGDPGLPGSAGPPGPQGKSGDPGLAGVRGENGQPGPPGPPGATGIQGFAGRA
GNAGAPGPPGPPGQAGSPGTNGVKGDKGEVGVGVPGSRGERGDPGPRGEDGRAGLDGERG
TTGPPGVRGTRGEKGDSGPQGEKGEKGDTKLVGGPAGEKGNKGETGDRGPKGTQGEKGVK
GQEGPSGEQGKNGEPGERGSTGFPGARGPGGQKGEPGQPGVPGESGLPGKDGLLGRKGDK
GEDGVTGLRGIKGDRGSKGVCGASGPKGEKGDAGIHGRSGLPGRKGEQGDLGPPGAPGTP
GKEGLVGPKGERGFDGLSGAKGTQGEKGERGPPGVPGPPGPRGMDGPAGLSGPQGPAGTK
GPEGLQGQKGERGPIGPAMVGPRGIPGIPGERGEAGEIGPDGAKGDKGEAGMTEDEIREY
VRSEMNQHCACGGSDPDSQSQPAVRARPTTDQQLVLKGRELRVVVNTNDPDYEHIYSIEA
LDDPVNDLLYFSTQPSTESDAVEDFKKESEKKDKVDADKSASADVQTKATVDGEKTDKVT
PLTADKSRSVRSKRRVKGEGSTDICLQAMDEGECQRYTLRWYFNSHSGACRPFVYGGCKG
NDNRFLQQEDCEKVCLREAEGPRLGTTAG
NT seq
9270 nt
NT seq
+upstream
nt +downstream
nt
atgtggaggtggatgttaactgttttgtccctgctgtctttcatgaaacatactgaagct
cagggcaggtgtaataatgtgcaggcagcagatatagttttcctgattgacgggtcttcg
agtattggtcggtcaaactttctacaggtgaagggcttcatggctggaattgtgaagccc
ttcgccagcgccgtcagcgcgtcaggaattcggtttggggctgtacagtacagcgacacc
tcaagggttgagttcacctttartacatacctgaatggcactgagcttatcaaagcggtg
caggatataagctataagggtggaaacacgcgcactggagctggtctcaagtttgtctca
gataattttttcaaccctgcatccctgcgggacgttccaaaggtcaatatcctgatcaca
gatgggaaatctcaggatcgtgtgcaggagccggcacagaagctgcgcagtcagggagta
aaggtttttgcagtaggcataaagagtgcagacaggaacgaactggctcaaatttcctca
cagcccagcaatgatttcacctcctttgttggagactttaagctgctaaacacactcctt
cctcttgttggtcctcgagtgtgttcagtcgcaggaggagtctatgtgagtgatgaggcg
ttttctggtccgtccaatattcagttcacaggccagacaacagactcacttaggttccgc
tggaatcctgccgggggccccgtgagtggctatgtgattcagtatgtgccactctctggc
ctgggccagccaatcaatgcagaattgcgacaggagactgtctcggccactcagaggacc
ttcacggtgcaagagctcaggtcaggaacagactacctagtgactatcatcgcccagtac
cccaacagtgttggcgagtccacttctgccaagcagagaaccaggtcattaccaggtgtc
tccagtctaagcttggtgcaggcaggctacttctccctgtctgttggatgggatccacct
tcatctcttgtccagggctacagacttacatatgggcctcgaggtcagccagcggctcag
ctgctggagctgtccctgcctgccgatgccacatcggccactttggagtctcttcagccc
gacacagaatacgtcattagcctgtacgccttgtttccccgcaactctgcaaccccrtct
gtcctcaatgctcaaacattgcgtctggaggcagtacagcagctgtctgtggaaacagtg
tcagagggcagcgttcgtgtgagatggagacgcattgctggtgtccaagcataccgatta
gtatggggagccttcacaggtcaaacatttgagacagttgagcttgcaggagacagtgag
ttctatactctgtccagactccaacctgaaactgaatacatcgtcacggtcctcccgctg
tatgagcaaaacacagaggggcctggagcaacagccagattcaagatagagcgtgaagaa
carcaggtcctcagagcagccaccaccgaaccctcgtcaatccgccttaactggagactc
attcggtcggcgcaggggtaccgcctggagtggagggaggggcaagtgttgtttgctcca
tcagggggtgctgttcagagtctgtcctttcctagaagcaccaccagctacgagctgaca
ggccttcgcccacaaacagaatacgtcttcaccttgtacaccctgttcgagggacgggag
gtggctacgcctgtctccactgaagacaaagaggcccagcctgtaggaagcgtgtccaat
ctgaaggtggtggagacactggrcagtaccgtcagacttggctggacgggcgtagctgga
gccacacagtaccgaatcatcatcctgaacacagatgatggaacagagaaactccaaact
atccctggagaccagacgacctttgacctcagagacttgatagttggagtgtcrtatggc
atcagtgtcacagcactggtgggagagaatgaaggggaagcagttactgtttacatcaaa
ccagagcaacaaatagggagagtgaccagtctcagggtcacaaatgtaaacagtcggaga
attcgaattgcctgggatagagttaccggagctaccggttacagagtcacctggagacaa
gacgaagaagcagaacgatcccgtcttctgggagcagaggccacagctttcaccatcgat
ggtctagatccggatgaggaactggtgattggtgttgcagctattgttgatcaacgtgct
ggagaagtggtcacactgtctacacggactaaccccgccagtggaacattgtctggattt
cgcgtcacagatatctcgtcacagaggatacgtattgcgtggtcacttgtttcwagggca
acaggatataagatcacttggcgcagtgatgatggaattgaaacaactagtaccgtagct
tccgatgtttcttcctacacaattgatagacttcagccgaattcagcctacactgtccaa
gtttctgcactgactggctctcgagagggaaccccttctattctgaatgttagaacagaa
ccagaccagtcagttgttgggactgtgacatctttgcaagtcctggagacccgaggagag
gttgtccgggtcacttgggttggtgtkcagggagcaacagcttatcgcatctcttggagg
agaacagacggtggtgtagagaggagccagctggtgggtggagatgtgtcarcagtggat
ttggaccagcttgaccctggagttcagtatgaggtgcaggtcaaggctttagttcaaaac
agagagggtacccctgtttctgtcagagtcaccacacctggttataacaccccacctccc
ttactaccaaccacaacgttacgggtgacagaagttaatcaggaatctgtgcggcttggc
tgggctcttattccaggaacaacagggtatattctccattggaaagaggagactgatgtt
ggtcaaggattgtccgttagtctccctccgtcgtccagttcctatctggtgaccggtctg
cgtttgggccgtcagtatagatttaccatacagcccacgtttcccagcggagtggcagca
gagacctttgtggacgagcgcactgtgtgtctgggcggacgtctcgacgtggtgtttctg
gtgcctgcatctactgatcggatcggtctggaaagacctctgcgtgacctcctcacaagt
gcagccgggtcacttgccaccattgggcctcgagactcacaagtaggggttgtagtttat
ggcttcagaccaaaaatatggttcctgctcaatcgccacatcagatctgacacgctgctc
caagagatccagtctacaccttttgacgaaagcccagggaataacattggtgaggcagtg
acattcactcgtcagtaccttctgaccccctcagctggacggagacctcgggtacctggt
gctgtcgtcatcatcgctgacagaaaatctgtcgacaacctgaccctcgcagccaacagt
ctgagaactacaggtgtgacggtgctggctgtagctgtagaccaagcagacacagaggag
ctgcgacgggccgtgacggatcgcagcacccagaacatcctgtatactcgagattcagct
caaatgaacacactgcacgctgacctggcagacttactttgtggtattgccagaataccg
gaggtatccccaggttcagaccaatgtaccgttcagtgtcctcagggtgagaagggagag
cgtggtgagaggggggagaggggcagggatggtgcagacggacgcaagggggagcctggt
cgtgacggtttgcctgggagagarggtcccagaggtcctgaaggacgacctggtccacca
ggacaaccgmtctctttcgacccctccgggataaaaggtgtaaagggtgagaggggcttt
ccaggtgttgatggaaatccaggattaccaggaagaccaggtgctcctggaaatgcaggc
gtcccaggctcacaaggcctccctggagtcagaggaagctcaggggaaccaggtggacaa
gggccaccagggctaaagggggataaaggtgaacggggtgaaccaggttcagctatatct
ggcgggggtcttccaggaaggaaaggagagccaggcatcccaggaataccgggtactccg
ggtcgaccgggcagtgacggggccaaaggatcccttggagttccagggacaccaggtcag
gatggtcgtccagggataccaggaactccgggtgtttccatcaagggagataagggcagc
acgggagagaggggacctccaggagtmggaagtggggtggctgtgaagggcgagaagggc
gtccctggaattccaggaactctaggaactccaggtgctagagggccatcaggacctcag
ggcagcaaaggagaaaagggcgatgaaggtgttggactccctggactccctggaaagcaa
ggagatcctggggaccggggtctgcgtgggcctgcgggtgaacttggcagcaagggcgac
cgaggtcagccgggtgagcctgggacacgaggagacaggggggagcgaggcccggctgga
gagactggggagaaaggggacgcagggaagccgggtatcccgggatcaccaggactgagg
ggtttaccaggaccaagtggagtgtctggagaaaagggaaacgaaggcgctcgaggggag
ccgggcagaagtgttcaaggtttaccaggaaagaaaggagatcagggggaacaaggcctg
cctggttctgagggtcaaaggggagagaagggagagcctggacaaagaggagagaaagga
tctccaggaggtggttcagatgaggctggaacaaaaggagatccaggagatcgaggaccc
cctggtcttagtggacgacctggagccaagggagactctggtgaaccaggagagagagga
gagaatggacgcccaggactcccaggaaaacctggtctccccggaaaacagggagagaaa
ggtgacaaaggtgatgaaggcacacctggagaaccaggrctttcagggaagccaggagaa
agaggactgcggggactggctggtcagcccggacgaccaggagagaaaggagacatggga
gacccaggagagcacggccgaaatggcagtcccggacctgctggaccgaggggagagaaa
ggagagctaggacctgaggggcctccaggaccaccaggaaaactggckgatacccaggct
ctgctgaaaggcgagcgaggtgagaagggtgacgcaggcgacccaggcgagcatggcagc
aaaggtcagaaaggcgaagcaggaactcccggagctccaggtctacgaggctcagaggga
ccgcgagggcctgccggcacaaaaggcgatgcaggagaaagaggagcaccaggagagaag
ggagacagaggagcatcaggcttggatgggcgacctggtctkgatgggaaaccaggttct
tcagggccacctggactaaggggagatccagggaaaacgggtgattctggaagagacgga
ttaccaggattaagaggtgagcagggtccgcagggacctattggtcctccaggaaatcca
ggaatacctgggaaagcaggtgaagatggcaaaactggtcctcctggcaaaacgggagac
gatggagtgcctggtgaagatgggagaaagggtgacaaaggagaagctggagcagctgga
agagatggccgtgacggggagaaaggtgaccgcgggcctgctgggactgcaggcccctct
ggtcccacgggacctcctggattgcctggcagcattggtcctcccggacaggttgtgtat
gtaaaaggagttgaagctgctccaatcccaggtccacagggacctcctggaacacctggg
gttcctgggatcccaggagcaggaggagctcgaggggagagaggtccacctggtcctaaa
ggtgacattggagacccaggagaggatggagctcctggtaaaccagggactgcagtggat
gtgcaaaaagctctggccagcctcggtattcaggtggctgatttgaaggtggtgatggag
aagaaggacaacattttgtctccctcagtgcaaaaagcagagaagggtgaaaagggggac
agaggcgaagctggaccaaggggaccatctggttcagatggtgctcgcggttttccagga
gacagaggaatcaaaggggaccaaggggagcgaggacagatgggaccggctggcctccca
ggaagagccattggcgagcgaggaccggagggacccccggggcctgcaggagaacctggc
aaacccgggatacctggtgttcctggaagagcgggggaactgggggaggctggcagacca
ggggaaaagggagagcgaggagataagggagacaaaggcgatgctggtctagttggatta
gcaggaccagctgggcctcaaggtgaaaagggagctcctggtgaatcagttctgcttggt
acccccgggctcagagggccmccaggcgaaaatggcgagcctggtccaactggcccttta
ggaccgaaaggagaacgaggtttcgcaggtcctcgtggtgaaaaaggtgacagaggagag
gttggagagaaaggacgtggaggctcaccgggtgaaccaggacaaccaggaaaatctggt
caggatgggaaaccgggcttgcctgggttccccggagttctaggcagaccgggaaaccca
ggagagaacggcataaggggaccaactggccccatgggtcctactggactgccaggtcca
atgggtttgaagggcagtcaaggagagccaggagttggtgtccagggtcctcctggtgct
cagggaagcacaggtcttccaggacccccaggtcctcctggagctgttggtccgcagggc
cccccggggctgtcggggcaggtgggtgaggctggtaaacctggagttcctggaagagac
ggagtccctgggaaagaaggaattcctggattaccaggaaaacagggtatcgctgggcct
ccaggacagcatggattgaagggggagcagggggacagtggccccccagggaaggctgtg
gctggacccattggacctaaaggagaacggggtccgcctggtgtaacactgccgggtata
gctggagaacgaggcgtccctggagaaaggggtgataaaggggatagagggtcagctggc
atcaaaggagacagaggagtggctggtgaacctggagagcgtggagaggaaggtcaacaa
ggatctgcagggcctaaaggagataagggagagaaaggcattggaccagcaggtccgcct
ggtcgtgtcggacctccaggtctgaagggagatccaggtcttcctggctcagctggtcct
ccaggaccacagggaaagtcaggagaccccggcctggctggtgtgagaggagagaatgga
caaccaggacctcctggacctccaggggcgacaggtatccaaggatttgcaggccgggca
ggaaacgctggagctcctggtcctcctggacctcctggacaggctggctctcctggtaca
aacggagtcaaaggggacaagggggaggttggtgttggtgtccctggttccagaggagag
agaggagatccagggcccagaggcgaagacggccgagctggtttggatggggagcgagga
acaacaggacccccgggggttcgaggwactcgaggagaaaagggagacagcggacctcag
ggtgaaaaaggagaaaagggggacactaagctggtgggaggacctgctggagaaaagggc
aacaaaggagaaactggtgacagaggacccaagggtacacaaggagaaaagggggttaaa
ggtcaagagggtccatcaggagagcagggtaagaatggagaacctggagaacgaggatcc
actggatttcctggggctcgtggtccaggtggacaaaagggagaaccaggccaacctggt
gtacccggtgaatcgggtttacctggaaaagatggacttttgggccgtaaaggggataaa
ggtgaagatggygtcacaggactgagaggaatcaagggtgaccgtggatccaagggggtt
tgtggagccagtggacctaaaggagaaaagggggatgctggtattcatggacgatcaggc
ctaccagggaggaaaggtgaacagggtgatttagggcccccgggagctcctggaacccct
ggaaaagagggtctagttggtcctaagggtgagcgtggttttgacgggctctctggagcc
aaaggaactcaaggagagaaaggtgaaaggggaccacctggtgtgcctggtcctccaggt
cccagagggatggatggacctgccggtttgagtggcccacaaggtccagctgggactaaa
ggcccagagggactccagggacagaagggggagagaggtccaattggacctgccatggtt
ggtcctcgaggtataccaggaatcccaggggagcgaggagaagcgggagagatcgggcca
gatggagccaagggagacaaaggagaggctggcatgacggaggatgagatcagagagtat
gttcgctcagagatgaatcagcattgtgcgtgtggaggttcagaccccgactctcagtct
cagcctgcagtcagggctcggcctacaacagaccaacagctggttctgaagggccgtgag
ctgcgggtggtggtgaacaccaacgacccggactacgaacacatctactccatcgaggcc
ctggaygacccagtgaacgacctgctctacttctccacacagccatccactgagtctgat
gcagttgaggatttcaaaaaggagtcagagaaaaaagacaaagtggatgcggataaatct
gcgagcgctgacgttcagacaaaagcaacagttgatggtgagaaaacggacaaagtgaca
cctctgactgcagacaagtccagatcagtcaggtctaagaggagagtcaaaggggaaggt
tcaacagacatatgtctgcaggccatggatgagggagaatgtcagcgatacactctgcgc
tggtactttaacagtcactctggagcctgcaggcctttcgtttacggtggctgcaaagga
aacgacaatcgcttcctccagcaggaggactgtgagaaggtctgcctcagggaggctgaa
ggtcctcgtctcggaacgacggcaggatga
DBGET
integrated database retrieval system
