Austrofundulus limnaeus (annual killifish): 106518904
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Entry
106518904 CDS
T06063
Name
(RefSeq) collagen alpha-1(IX) chain-like
KO
K08131
collagen type IX alpha
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim04510
Focal adhesion
alim04512
ECM-receptor interaction
alim04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106518904
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
106518904
09142 Cell motility
04820 Cytoskeleton in muscle cells
106518904
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
alim00535
]
106518904
Proteoglycans [BR:
alim00535
]
Extracellular matrix (ECM) proteoglycans
Others
106518904
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
106518904
NCBI-ProteinID:
XP_013865831
UniProt:
A0A2I4BDL2
LinkDB
All DBs
Position
Unknown
AA seq
678 aa
AA seq
DB search
MMAGAPSVRGPLLVVLLQLVLICSSQRNQGPPGPPGPPGVPGIDGIAGERGADGEDGAPG
PDGDAGKPGSSGLPGIPGKDGLTGPVGDPGPDGPPGQKGEPGQVGPRGAAGVGPDGPFGS
RGPGGLLGEVGKVGPPGSMGVRGPQGPRGPAGPRGAAGALGTSDLCPNSCPPGTSGHPGL
PGMKGHKGVKGEAGEPGKQGHKGEEGDQGGPGEVGAQGPTGPQGIRGATGMMGLKGEMGV
RGPDGEPGPQGVAGASGDQGQRGVMGESGPKGEMGVQGSRGITGLPGPKGETGLPGVDGR
EGIPGMPGGKGSVGRPGVPGEVGLQGLPGLPGSPGTKGSSGPKGDGGKQGLPGELGSTGK
PGERGEQGEAGPVGPIGEPGDIGDQGLVGPAGKMGTRGPKGDPGLPGLPGPPGLPGIKGE
RGERGEPGPKGEQGVQGDEGNPGDRGDSGEPGEPGPKGETGTPGDPGQRGPEGSRGQPGI
EGPPGTPGPRGMQGNRGLRGVRGSQGPAGKEPSDQHIRQVCMRVMQEQLAQLAASLRRPE
TGAAGLPGKPGPPGPPGPQGDNGFPGQAGARGLPGLKGPPGQMGLKGPKGELGDRGARGP
TVRGPKGQPGPPGLHGEPGKPGYGQDGRDGQRGPPGVPGQPGVPGPPGPAGVNGYCDPSA
CNLQAGAVQQDVKGPSGN
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgatggctggggccccgagtgttagaggrccccttcttgtggttctcctgcagcttgtc
ctcatttgctcctcgcaaaggaatcagggaccccctggtcctcctggacccccaggagtc
ccaggaattgatggcattgctggggaaaggggggcagacggcgaggacggggctccggga
cctgatggagacgcaggtaaacctggttcttcaggattaccaggaatccctggaaaggat
ggtttgaccggccccgttggagatcctgggcctgatggtcccccgggacagaaaggggaa
cctggacaagttggaccccgtggagcagccggcgttggacccgatggaccctttggatca
cgtgggcctgggggacttctgggggaagtaggaaaagttggaccacctgggtccatgggt
gtgagaggaccacagggacctcgtggaccagccggccctagaggtgcagctggagccctg
ggcacttctgacctgtgtccaaactcttgtccacctggaacctctggacatcctggtcta
cctggtatgaagggccacaaaggggtaaaaggtgaagcaggagagcctgggaagcaggga
cacaagggtgaagaaggagaccagggaggtccaggagaggtcggagcccagggtccaacg
ggacctcaggggattcgcggcgccacaggaatgatgggtctcaagggagagatgggtgtt
cgaggtcctgacggagagccaggtcctcagggtgtggcaggggcatctggggatcaaggc
cagaggggtgtgatgggggagtctgggcctaaaggtgaaatgggtgttcaaggctcaaga
gggatcacgggacttccaggtcctaaaggagaaactggcttaccgggcgtggacggccgt
gagggtattcctggtatgccaggaggaaagggaagcgtcgggaggccaggcgttcccgga
gaggttggacttcaggggcttcctggtttgccaggttcacctggaacaaaaggctccagt
ggccctaagggtgacggtggtaagcaaggactccccggagagctgggctccactggtaaa
cctggtgagcgtggagaacagggagaggcgggacctgttggacccatcggtgaacccgga
gatataggagaccaaggcctggtgggtccagctgggaaaatgggcacgaggggaccaaaa
ggtgatcctggtcttcctggtctccctggtcctcctggtcttcctggaataaaaggagag
aggggagaacgtggagaaccgggacctaaaggagaacaaggagtacaaggtgatgaggga
aaccctggagacagaggggattctggtgagccgggagaacctggtcccaaaggcgagacc
ggtacgcctggtgacccaggccaaaggggtcccgaggggagtcgaggtcagccgggtatc
gaaggccctcccgggacacctggaccacgggggatgcaagggaacaggggtctgcgtgga
gtcagagggtcccagggacctgcgggtaaagagccgagcgatcagcacatcagacaagtt
tgcatgcgagtcatgcaagaacagctggcccagctggctgccagtttaagaaggccggag
accggtgccgccggtttacctgggaaacccggtcctcctgggcctcccggrccccaaggt
gacaacggtttccccggacaggctggagcgaggggccttccaggactcaaagggccaccg
gggcagatggggctgaaaggaccaaaaggtgaactgggagacagaggggccagagggccc
actgtgagaggacctaaaggtcagcctggacctcctggacttcatggagagcccggcaaa
cctggctacggtcaggatggtcgggacgggcagaggggacctccaggcgttcctggccag
cccggcgtgcccgggcctccaggtccagctggtgtgaacggttactgcgacccatcagcc
tgcaacctccaggcaggagctgtccagcaggatgtgaagggaccctcggggaactaa
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