Austrofundulus limnaeus (annual killifish): 106518994
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Entry
106518994 CDS
T06063
Symbol
col19a1
Name
(RefSeq) collagen alpha-1(XIX) chain
KO
K24340
collagen type XIX alpha
Organism
alim
Austrofundulus limnaeus (annual killifish)
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
alim00536
]
106518994 (col19a1)
Glycosaminoglycan binding proteins [BR:
alim00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106518994 (col19a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
106518994
NCBI-ProteinID:
XP_013865946
UniProt:
A0A2I4BDX6
LinkDB
All DBs
Position
Unknown
AA seq
1106 aa
AA seq
DB search
MVVVIGVVVVSALKETLSAILFSGGLPSSTRAMIYCLLRWVAFFWTVSSVPRTFGMAVSE
RADGLCPSLTVEDHRFSDSLDRPLEITGFDLTEKFLLRKGTVTEDLPSFRLGSSPLIKST
KLLFPDGFSSEYSLVSIFRVRRTTKKDRWYLWRIFDQTGNQVSVVVDGDKKVLEFSYRAQ
LKTTNRYTFKSRDLHALFDRQWHKLSISVHSNSISIYMDCRRIEGGVIDERDSIDLGGHT
LITTRVEDEKPVDIELKQILLYCDPYMAEMENCCELLDPECGIKKTVNGTSPPPATTQIP
LMLSQPASQSIDRCHCPAEKGDTGETGLPGNPGHEGDVGLPGDSGLPAGSDCFKGDQGPQ
GEKGEKGAPGQPGKEGKRGRRGKTGEPGLRGLPGPPGSSEGASVKGENGESGVPRGTGEK
GERGDPGQPGAEGTGGMKGQKGDVGPPGPPGPPGLVMTAHGLRQLSGTDEMKETAQKGEK
GETGENGIQGPQGLKGSIGPPGLKGDQGPEGKQGQPGSIGLPGLPGEPGLPGKPGAPGRD
GLRGEKGDSGGVIGPQGPPGPKGEPGEPGGGSMGDGLSQARGSRGPKGERGIPGLPGDHG
EKGEPGESIIGPAGPPGKPGTEGPRGSQGFPGLSGPPGREGSPGRPGPPGPAGPPGEPTA
LPIVGDMGALLKNACGVCQTRVPGLPGQKGEKGPPGAQGLEGSVGEKGDPGVRGPTGNPG
KEGPKGVKGERGFPGPDGDKGDEGPIGAPGLPGVTGRTGAPGLMGRPGSMGQPGPKGDKG
NEGPPGRPGLPGPPGVPYVEGNGMSSLYKLQSGGAILGPPGAPGASGPKGDEGPAGEPGP
MGLPGLEGLPGTKGDIGLPGPQGTPGPAGKPGARGEPGIPGEPGERGPIGETGFPGPEGP
QGVPGRPGRDGTPGYKGDTGRLGDRGSKGERGDPGIPGERGVQGERGRVGDPGPVGXIGP
PGEKGDPGPPGQXGRVQLLDDPSFTDELREFIQNEVMRIFEEKVSSHGMQQKKPAGILAS
QIQGPPGPPGKDGTPGPPGEPGPPGPQGYRGQKGERGQVGLGLPGDPGPTGPPGPPGTTS
RGPPGSPGPRGPPGTCDPSDCFFPAS
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atggttgtggtaattggagttgtggttgtttctgccttaaaggaaactttatcagcaatt
ttgttttcaggtggactgccttccagcaccagagccatgatttattgcttactaagatgg
gttgcttttttttggaccgtgagctcggttcctcgcacttttggaatggcagtgagtgaa
cgagcagatggcttgtgtcccagtctgactgtggaagatcacaggttttctgatagttta
gatcgtccactggaaatcacaggatttgatctcactgaaaaattccttctacgtaaagga
acagtcacagaagacctgccgtcgtttcgattaggaagcagtccacttattaagtcaaca
aaattactatttcctgatgggttttcaagtgagtactcacttgtgtccatcttccgggtg
agacgaactacaaaaaaagaccgttggtatctttggcggatatttgaccagacaggaaac
caggtgtctgtggtggttgatggtgataaaaaggtgttggagttttcttaccgggcccag
ctgaagaccaccaaccgctacacgtttaaaagtcgtgacctgcatgccctctttgatcgc
cagtggcacaagctgagcatttctgtacatagcaactccatctccatttacatggactgc
agacgaatagaaggaggtgtgattgatgagagggacagcattgacctcggtgggcacaca
ctcatcactacgcgagtggaggatgaaaagcctgtcgatattgaactgaaacaaattctc
ctttactgtgacccctatatggccgagatggaaaattgttgtgaactccttgatccagag
tgtggcatcaagaagacagttaatgggacatcccctcctccagctacaacccagattccc
ctgatgctctctcagccggcctcacagtcaattgacagatgtcactgtccagctgaaaag
ggggacacgggggagactggacttccaggaaacccaggacatgagggagacgtcggcctc
cctggagactcggggctgcctgctggcagtgactgtttcaaaggagatcagggccctcaa
ggagaaaaaggagaaaagggagcaccgggtcagccaggcaaagagggcaaaagggggcgg
agaggaaagactggggagcctggactcagaggcctacctggtcctccgggaagttctgaa
ggtgcaagtgtcaagggggagaacggggagtctggagtcccgaggggaacgggggagaaa
ggagagcgaggagatcctggtcagccgggtgccgaggggaccggcggcatgaaaggacaa
aaaggtgatgttggtcctcctggtcctcctggccctcctgggcttgtgatgacagctcac
ggattaagacagctctcaggaactgatgaaatgaaggaaacagcccagaaaggtgaaaaa
ggagagacgggcgagaatggaattcaaggaccccaaggcttaaagggaagcatcgggcca
ccagggttaaagggagaccaagggccagaggggaaacaaggccagccaggatccatcgga
ctcccaggactcccaggcgagcccggcttaccagggaagccaggggcgcctgggagagat
ggcctgagaggagaaaagggggactctggtggtgtgattggccctcaaggtcctcctggt
cctaagggcgagcctggagaacctggtggtggatctatgggcgatgggttgtcacaagct
agagggtctcgtggtccgaagggcgagcgaggcataccgggtttaccaggagaccacgga
gaaaagggagaacctggggagagcatcattggccccgcgggacccccggggaaaccagga
accgagggccctcgtggatcccaaggctttcctggactttctggaccaccaggaagagag
ggctcccctggtagaccaggtccgccgggcccagctggacctccaggtgaaccaactgcc
ttgcctattgttggagacatgggtgctttactcaagaacgcctgcggtgtgtgccagaca
agagttcccgggctgcccgggcagaagggagagaaggggccccctggagcgcaaggacta
gaaggctcggtgggagagaagggagatccaggtgtgagaggtccgacgggtaaccccggg
aaagaaggtcctaagggagtaaaaggagaaagaggcttcccgggacctgatggagataaa
ggtgacgaggggcctataggtgcgccaggacttccaggtgtgacaggtcgaacaggagca
ccggggctcatgggcagacctggttcaatgggccaaccaggaccaaaaggagacaaagga
aacgaaggacctccaggcaggccaggactcccaggtcctccaggtgtgccttatgtggag
ggcaatgggatgagcagtctgtacaagcttcagagcggtggagctattttaggaccgcct
ggagctcctggtgcctcgggtcccaaaggagatgaaggacctgctggggagccaggaccc
atgggcttacccgggcttgaagggctacccggcaccaagggtgatattggtttgcctgga
ccccaagggacaccaggtccagcagggaagcccggcgctcgcggagagccagggatccca
ggagagccgggtgagagggggccgatcggtgagacaggattccctggacctgagggaccc
caaggtgttcctggccggcccggaagagatggaactccgggatacaagggcgacacaggt
cgactgggagaccgaggatccaaaggagagcgtggcgatccggggattcccggggaaaga
ggcgttcaaggtgagaggggtcgcgtaggagatcctggccctgtcggasctatcggaccg
ccgggcgaaaaaggcgaccctggtcctcctggacagrtggggcgtgtccagctactggat
gatcccagctttacagatgaactcagagaatttatccaaaacgaagtaatgagaattttt
gaagagaaagtgtccagccatggkatgcagcagaagaaacctgctggcatcttagcctca
cagatccaaggacctcctggaccccctggcaaggatggaacaccaggtcctccgggagag
cctgggccacctggtcctcaaggatacagaggtcaaaaaggagaacgaggacaggttggg
ctggggttgccaggagatccaggacccacggggccaccgggcccacctgggaccacctct
cggggacctcctggctctccaggaccccgtggacctcctggcacatgtgatcccagtgac
tgttttttcccagcctcataa
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