Austrofundulus limnaeus (annual killifish): 106519040
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Entry
106519040 CDS
T06063
Symbol
col9a3
Name
(RefSeq) collagen alpha-3(IX) chain isoform X1
KO
K08131
collagen type IX alpha
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim04510
Focal adhesion
alim04512
ECM-receptor interaction
alim04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106519040 (col9a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
106519040 (col9a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
106519040 (col9a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
alim00535
]
106519040 (col9a3)
Proteoglycans [BR:
alim00535
]
Extracellular matrix (ECM) proteoglycans
Others
106519040 (col9a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
106519040
NCBI-ProteinID:
XP_013865993
UniProt:
A0A2I4BE27
LinkDB
All DBs
Position
Unknown
AA seq
678 aa
AA seq
DB search
MTAFPALWLLLVCQLLSSSSAQRPGPRGPPGSPGSPGQPGRDGTDGKNGPAGLPGKPGPK
GKAGIPGAAGKPGLPGLPGIDGLTGPDGPAGRDGPPGEAGEAGPPGPPGPPGRGRPGAPG
LPGTNGLPGGVGPQGPVGAEGLPGLPGPPGPDGPPGPPGTLQDLNGELLCPAICPPGPPG
PPGMPGFKGHTGHKGDKGEQGKDGEKGDPGPPGPTGVPGTVGLQGPRGLRGLPGTMGPVG
DRGLPGFRGKPGIAGIIGKTGDVGEKGPHGFRGPKGEIGKTGPKGAPGGPGPKGDPGMPG
RDGKDGTPGLDGEKGDPGRHGVVGEKGPNGLPGLQGKAGEKGSKGEVGDPGKPGETGPSG
EPGIPGEIGVPGERGLAGPRGVAGGIGLAGNPGPLGVKGFQGVSGGLGEPGLPGPTGLRG
EFGDRGPVGASGPKGDMGVAGSDGLPGENGEAGPFGPVGQKGEPGKQGELGPKGVTGPQG
ELGPRGGPGKQGPMGFQGEQGLPGIAGKTGVPGKLASEQHIRELCGSMIDDQIAQLAANL
RRPLAPGMVGRPGPAGPPGQPGVAGSIGHPGTRGPPGYRGLPGELGDPGPRGDVGEPGDK
GPIGKAIDGPTGDQGHQGLPGVAGIAKDGRDGSPGDPGEPGEPGRVGRTGHHGPPGICDT
SACQGASVAGKSSNPKNF
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgacggcgttccctgctctttggctgctcttggtgtgccagcttttgtcatcctcctca
gctcagagacccggccccagagggcccccagggtcacccggatccccagggcaaccagga
agagatgggactgatggaaaaaatggacccgctggactgccggggaaacctggtcccaaa
ggaaaagcaggaataccaggagcagcaggaaaaccgggcctgccgggacttccagggatt
gatggtttaaccggtcctgacggtcctgctggcagagatggacccccgggggaggcaggt
gaagcagggcctcctggaccacctggacctcctggcagagggagaccaggagctccagga
ctacctggaaccaacgggttgccgggaggagttggaccccagggtcctgtgggtgctgaa
ggtcttccaggacttccaggacctcctggccctgatgggccccctgggcctcctggtaca
cttcaggatcttaatggggaacttctgtgtcctgcaatctgcccccctggtcctcctggt
ccacctgggatgccaggtttcaagggacacacaggacacaaaggagacaagggggagcag
ggaaaagatggagagaagggggaccctggtccaccaggaccaacaggtgtaccaggcact
gtgggtctgcagggcccacgtggtctgagaggtttaccaggaacaatgggacctgtaggc
gacagaggcctgcctggcttcagaggcaagcccggcattgcgggcatcattggcaagaca
ggtgatgttggtgaaaaaggaccgcatggattcagaggacctaaaggagaaatcggtaaa
actggtcccaaaggagctcctgggggaccaggacccaaaggagatcctggtatgcctggg
agagatggcaaagatgggacgccagggttggatggtgagaagggtgatcctggacgtcat
ggagtagtaggagaaaaaggaccaaatggacttcctggtctacaaggaaaagctggtgaa
aaggggtctaaaggagaagtgggtgatccagggaagcctggagagacgggaccctctgga
gagccaggtattcctggtgagattggcgtcccgggggagagggggttagcaggacccaga
ggagtggcgggaggtatcggactggcgggcaatcctggtccgcttggagtgaaaggcttc
cagggagtcagtggaggtttaggcgagccaggtctcccagggccaacgggactccgtgga
gagtttggtgacagaggtccagttggagcttcgggacctaaaggagacatgggtgtggca
ggaagtgatggtttaccaggagagaacggagaggctggtccatttggaccagttggacaa
aaaggagagccagggaagcagggggagctggggccaaagggtgtgacgggcccacaaggt
gaactcgggccaagagggggtccagggaaacagggaccaatgggcttccaaggggaacag
ggtctgccaggaattgcaggaaagacaggagtacctggtaaattggcgagtgaacagcac
atcagagagttgtgtggttcaatgatcgatgaccagatcgcacagctggctgcaaacctt
agaaggcctctggcacctggaatggtgggccgccccggccctgcagggcctccaggacag
ccaggagttgcaggttctattggacatccaggcactcgaggaccaccagggtacaggggc
ctcccaggagagctgggagatcctggtcccagaggtgatgttggtgagcctggtgacaag
ggacccattggcaaagccattgatggacccactggagaccaaggacaccaaggtctgccc
ggagtcgctggaattgccaaagatggtcgtgacggatctcccggagatccgggtgagcct
ggagagccaggaagggtaggtaggactgggcaccatggacctcctgggatctgtgataca
tcagcctgccagggagcgtcagtcgctggcaaatcctccaaccccaaaaatttttaa
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