Austrofundulus limnaeus (annual killifish): 106519127
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Entry
106519127 CDS
T06063
Symbol
scaf8
Name
(RefSeq) protein SCAF8
KO
K13191
RNA-binding protein 16
Organism
alim
Austrofundulus limnaeus (annual killifish)
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
alim03021
]
106519127 (scaf8)
03041 Spliceosome [BR:
alim03041
]
106519127 (scaf8)
Transcription machinery [BR:
alim03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
106519127 (scaf8)
Spliceosome [BR:
alim03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
106519127 (scaf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
PRP38_assoc
DUF3525
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
106519127
NCBI-ProteinID:
XP_013866127
UniProt:
A0A2I4BEG0
LinkDB
All DBs
Position
Unknown
AA seq
1366 aa
AA seq
DB search
MEAVKAFNNELYSLTEYKPPISKAKMTQITKSGIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGTEKDVFAPRFSKNIIATFQHLYRCPPDEKSKIVRVLNLWQKN
SVFKSDIIQPLLDMAAGIPPPSTTPVLPSSAAPINNTTPGTPATPATPANIVPGLPEWAS
QITNTDTVAAVAQILQSPQGQQLQQLVQSLQMQQQKPQPSLLQALDAGLVVQLQALTAQL
TAAATANSLNPLEQRVSSFNKKLLGPFDFGGDSERSEESKKDTSSSQLPMVSEPINSSLF
HQLAEQLQQQNLEQFQKQLLEHQQKAMNIESQDSIFGQENSVRTAQNSSQPQLPEPESKM
DDSIDNQQQDMDLDEGPDGMEEEEEEIFEPEEKKTTSTRSRTRSRSRSRSPKRRRSRSRS
GSRKRKHRKRSRSRSRDRKRKSSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTLW
VGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYICMVHRQDAYRALQKLSTGSFKIG
SKIIKIAWALNKGVKQEYKQFWDADLGVTYIPWEKVKVDDLDGFAEGGIIDQETVNDEWE
IVKSTDPAKEVTSQPVSTEATVVSNTQTETYSQQVTMMPVQLPVPQAVPSAVGLVPPTFP
VAMSIPPPGYGPPPPFIRPSFNATQPPPGFLQAPHTAGMAPVTTSLLQPSVATSQEAVKE
TPFSTMIPPTSTIPGSFMPSAIPGPGIFPPVGVQTQQANNEKMPQSAEAMGAAADLALQG
MQNAVRSGMGLLGMHPTASLTHPLHQSGLSGQRMPGLLPMDVRPNLLQPGPAARFPLLLQ
QGHAQQAAGLLDGSLQARPRAPFPHMDIFNRAPNLTSENVSKTEDESCSRADEGKDQDYR
FPPVEKQSTGLLRTPPPEHRETLGGGGGPGGGGGRPPLLQTPGTQPVRSSLVGRLQALAG
FTPDNRWNQSKGDFDERDGMRGGPPAPGGPKGFQDERPPSGPNFPSRFDSRPGAAGGAGP
GGGPQPWSRGGGATFSNELHKDLDDRRRPWERQRDRDERDVDFRRDMNGNRHNRERERER
DRGRERTREHERDRDSDKEKERERGGWTPLLPLPTPLLPTPPLNPNLTLNQGKLLVPLKL
NPQVQPRFQSPLFPQSQAKPPLLGLKQPLPLAQIRSPPPXQTQAPVSKPQSETPDPDETP
PAQSAGSPHPSSDTQGQSTLTEPPSQPEPSPQPETPSQKKSPPQTTASPDTKYPSHHSPL
ALTQADSPPEDPTSSVEKQEEPQKASQEERFSMPQPEWVNGPEKDHVNVAEPTPEPEHHS
LLIETETEPKQEQLSSPRDLNNEQKEPLEEALSQPVVDTVTDTEGT
NT seq
4101 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtcaaagcctttaacaacgagctgtactcgttgactgagtacaaaccgccc
atctccaaggccaagatgactcagatcaccaagtcaggaatcaaggctataaaattttac
aagcatgttgtccagagtgtagagaagttcatacaaaagtgcaagccagaatacaaagtc
ccggggctgtatgtcatcgattccatagtcagacagtcacgccaccagtttggcacagag
aaagatgtgtttgctccgcgcttcagcaagaatatcatagcaaccttccagcacctctac
cgctgccctccagatgaaaagagtaagatcgtgcgtgtcctgaatctgtggcagaagaat
tcggtctttaagagtgacatcattcagcctctgttggacatggctgcggggattcctcct
cccagcactacgcctgtcctgcccagcagtgctgctccaataaataacactacacctggc
actccagctacacctgccactccggcaaacattgtcccaggtctgcctgagtgggcatcc
cagattacaaacacggacactgttgctgctgttgcacagatcttacagagtccccaagga
caacagcttcaacagttggtacagagtctgcagatgcagcagcagaagccccagccatcc
ttgctgcaggccttggatgccggcctggtggtgcagttgcaagctttgacagctcagctc
actgccgcagccactgccaacagcctcaaccctcttgagcagagagtttcctcttttaat
aagaaacttttgggtccgtttgactttgggggtgattctgaacgcagtgaagaatctaaa
aaagacacctcatcttctcaactgcccatggtgtcagagcctattaacagctcactcttt
catcaactggctgagcaactgcagcagcagaacctggaacagtttcagaagcagctgctg
gagcaccagcagaaggcaatgaatatagagagccaagactcaatctttgggcaggaaaac
tctgttagaactgcacagaacagcagccagccgcagcttcctgagccrgagagcaagatg
gatgactccatagacaaccaacagcaggatatggacctggacgagggtcctgatggaatg
gaggaggaggaggaggagatctttgaaccagaggagaagaaaacgacaagtacacggtcc
agaacacgttccaggtcacgctcgagatctcctaaacgaagaaggtcsaggtcccgttct
ggctctcggaaacgcaagcatcgcaagcggtcacgctcgcgctccagagatcgcaagagg
aagtcttcacggtcttactcgagtgaaaggcgtgccagggaacgagagaaggagcgtcag
aagaaaggattacctcctatacgatccaagactctaagtgtgtgcagcacaactctgtgg
gtgggacaggtggacaaaaaggccactcagcaagacctcacaaatctgtttgargaattt
ggccagatcgagtccatcaatatgatccctcccagaggctgygcctacatctgtatggtc
cacagacaggatgcataccgtgccctccagaagcttagtactggctcttttaagattgga
tccaagatcatcaagattgcatgggctttgaacaaaggtgtaaagcaagagtacaagcag
ttttgggatgcagaccttggtgtcacctacataccatgggagaaggtcaaagtagatgac
ctggatggctttgctgaaggggggatcatcgatcaggaaacagtcaatgatgagtgggaa
attgttaagagcactgatccagccaaggaagttacaagtcaaccagtaagcaccgaggca
acagtggtatccaatacacaaactgagacctacagccagcaggttaccatgatgcctgta
cagctaccagtgcctcaggcagttcccagtgcagtaggtttggtacctcctacttttcct
gttgcgatgagcatacctccaccaggctatgggccaccaccaccatttataaggcctagc
tttaatgccacacagcctccaccaggttttttgcaggccccgcacacagcaggaatggcc
ccagttactacgtctttattgcagccatctgtggccaccagtcaagaagctgtcaaagag
acacccttcagcactatgatccctccaaccagcactatccctggcagcttcatgccctca
gccatcccaggacctggtatttttcctccagtgggagtccaaactcagcaggctaacaat
gagaaaatgccacagtctgcagaggcaatgggtgctgcagcagatctcgctctacaaggc
atgcagaatgcagtccgcagtgggatgggtctacttggcatgcaccctacagcttccctc
acccatccgctgcatcagtccgggttgagtggtcagagaatgcctgggctgttgcctatg
gatgttcgaccgaatctccttcaaccagggcctgctgctcgcttcccactccttctgcag
cagggtcatgcccagcaagcagctggccttcttgacggttctctccaggcccgcccccgg
gccccctttcctcatatggacatcttcaacagggccccaaacctcaccagtgaaaatgtg
tccaaaacagaagatgagtcctgctctagagccgatgaggggaaagaccaagactaccgc
ttcccacctgtagaaaagcagagtacaggcttactgcggacccctccaccagagcacaga
gagacccttggaggtggtggaggtccaggaggaggaggaggaaggccgcctttgcttcag
acccctggaactcagccagtaagatccagcttggtgggacgtttgcaggcacttgcaggc
ttcactcctgataaccgctggaaccaatccaaaggggactttgatgagcgagatggcatg
cgaggaggaccaccggccccaggtggtccaaaaggttttcaggatgaacgccctccctct
gggccaaacttccccagtcgttttgacagccgtcctggagcagcaggtggagcgggacct
ggtgggggtccgcagccctggagccgtggaggtggtgctaccttcagcaatgaacttcat
aaagacctagatgaccgaagacgtccatgggagagacaaagagacagagatgaaagagat
gttgactttaggagagacatgaacggtaatcgccacaaccgtgagcgagagcgcgagcgg
gatcgaggacgagaacgcaccagagaacacgagcgcgatcgagatagcgacaaagagaag
gagcgtgaacgtggaggctggacacctctccttcctctgcctactccgctccttcccacc
cctcctcttaatcccaacctgacgctgaatcaaggcaaacttctggttcctctcaaatta
aacccccaggttcagccacgattccagtctccacttttccctcaaagtcaggccaaacct
cccctcctgggtctgaaacaaccactccctctggctcaaattaggtctcctcctccatyg
cagacccaagcacctgtttctaagcctcagtctgaaactccagatcctgatgaaacccct
ccagcacagtcagctggttcaccccatccgtcatctgacacccagggtcagagtacatta
accgagcctccctctcagcctgagccatcaccacaaccagaaaccccatcacaaaagaaa
tcaccacctcagacaactgcttctccagacactaagtacccaagccatcactcccctttg
gccctcacacaagctgatagcccccctgaggaccccacttcctctgtggaaaagcaggaa
gagccacagaaggcgtcccaagaagagagattctctatgccacaacctgagtgggtcaat
ggacccgagaaggaccatgtcaatgtggctgagcctacaccagaacctgaacatcattct
ttgctcattgaaactgaaactgagccgaagcaggagcaattatcatctcctagggaccta
aacaatgaacagaaggagcccctggaggaagctctgagtcagccagtggtagacactgtc
acagacactgaggggacataa
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