Austrofundulus limnaeus (annual killifish): 106520079
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Entry
106520079 CDS
T06063
Symbol
col5a2
Name
(RefSeq) collagen alpha-2(V) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
106520079 (col5a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
alim00536
]
106520079 (col5a2)
Glycosaminoglycan binding proteins [BR:
alim00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106520079 (col5a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Amnionless
Motif
Other DBs
NCBI-GeneID:
106520079
NCBI-ProteinID:
XP_013867460
UniProt:
A0A2I4BI78
LinkDB
All DBs
Position
Unknown
AA seq
1588 aa
AA seq
DB search
MGFSLRSRISICLALTLAQVIAVTCQEDTKRDFCTENGQVYPNKEMWNPEPCRICMCDNG
VTICEDVVCEDLSACQNAVIPEGECCPVCLAAASTLIPSTDTVTAADDKGESCKADGEVH
QHNDIWKPTPCRVCVCDNGVSICDEVQCETLANCEKVVTPEGECCPVCNSFSSASSRIEM
LGFKGQKGEPGDIPYAVGLPGLPGPSGPPGAQGRSGPRGFKGRRGFPGPPGFDGEPGIPG
NPGEPGPPGEASPPGTNLVSEMASGFSEKSGWARMTTASRGEAGPRGIPGASGAPGPPGG
QGIPGEAGDPGPMGDPGHRGPDGPPGRPGPDGEPGPAGSAGEKGFPGSAGARGFPGLPGL
PGLKGHKGSSGLDGPKGESGAVGAKGASGTPGPMGPPGPQGAAGLQGERGRIGPTGPVGK
RGTPGHVGKPGPLGPIGIPGMPGFPGNPGNKGEAGPTGVRGSRGQQGPRGDAGRAGPAGP
TGQQGAAGPDGAPGARGSSGLAGVQGPPGFAGPAGPPGPQGTTGATGPKGQLGDGGFPGL
KGEPGLKGERGDHGLPGPLGPMGEDGKRGPRGDAGSIGPPGPAGETGPPGNRGFPGADGL
PGQKGAQGERGLTGSPGGKGLIGDPGRDGEPGLTGARGLTGPIGAQGAEGRPGPMSLAGE
DGKPGPAGSTGNRGPAGNMGLPGPKGFAGDAGKIGEAGSPGPPGQRGVNGKDGETGAAGP
PGPAGPAGKRGEQGPQGVSGFQGLPGPPGPPGEGGKPGDEGLAGEVGAVGGTGPRGERGP
PGERGETGPNGLLGPKGGPGAPGSDGPKGSPGPKGAGGEPGGPGLQGMPGERGIPGPSGP
KGDAGSVGEKGLEGKAGADGARGLAGSVGPAGPTGPNGEKGEIGPPGPTGRRGSRGGPGS
TGDPGPIGAAGFSGPPGPDGQPGVKGETGEPGQKGETGAPGPQGTAEKPGEQGPVGVTGL
KGGRGTQGPAGSPGFPGLPGKVGPPGPSGAVGADGPIGVPGKKGLPGIRGENGALGRQGE
SGPPGPQGTPGEKGESGEDGPPGPDGPPGPAGTSGQRGIVGQPGVRGERGLMGLSGPAGP
PGKTGTTGAQGSKGPAGVIGLPGPTGPRGDAGPEGVAGAEGSPGKDGLVGERGDKGNPGP
EGLPGASGSPGNEGPVGFTGGPGQMGANGERGPPGPQGQPGIRGKVGPQGPQGDKGGAGE
QGERGQKGHRGFTGLQGLPGITGATGDAGERGIVGPAGQRGPPGVVGPPGKEGNIGHPGA
AGAPGSRGTSGDIGAQGPPGEPGPPGPPGSPGPPTTAVEELFSLDYEGNGDVQEGVGVAE
YDHAEYDVAADPPPPPEFNEDEALPNKNIMHAETGIRATLKTLSGHLQNLRSPDGSKMNP
AKTCQDIKQCYPQKNSGDYWLDPNQGSAKDAIRVFCNMETGETCISANPNNIPRKAWWTK
SSPSPNQPLWFEADMNGGTKFLYGNKEEQPNVVAVQMKLLQLLSKESHQNITYHCKNSVA
YKDQNGSLKKALILRGANGQELRAQGNPRTRYTVIEDSCSTSNGQWGKTVIEYRTKTATK
LPVVDLAPLGVGKPDQEFGVDIGPVCFS
NT seq
4767 nt
NT seq
+upstream
nt +downstream
nt
atgggtttctcactccgctctaggatttcaatatgcctggcccttaccttggctcaggtg
attgctgtgacctgccaagaagacaccaagagagacttctgcacagaaaatggacaagtc
taccccaacaaggagatgtggaaccctgagccgtgtcggatctgcatgtgcgataacggt
gtcaccatttgtgaagacgtggtgtgtgaggatctcagtgcttgtcagaacgctgtgatc
ccagagggcgaatgttgtcccgtgtgcctagctgctgcttcaacacttattccgagcaca
gacacggtgacagctgcagatgataaaggtgagagctgcaaggccgacggggaggtccac
caacacaacgacatctggaaacccacgccttgtcgcgtgtgtgtttgcgacaatggcgtc
tcaatctgcgacgaggttcagtgtgaaacgttggcgaactgcgagaaggtcgtcacgcct
gagggagagtgctgcccagtgtgtaacagcttctccagtgccagctcaaggatcgaaatg
ttgggctttaagggacagaaaggtgaaccaggtgatatcccatatgcggtggggctccct
ggacttccaggaccatcgggccctccaggtgctcagggacgctctggaccaagaggtttt
aaaggccgacgaggatttccaggtcctccaggatttgacggtgagcctggaattccaggt
aacccaggagaaccaggaccccccggtgaagcctctcctcctgggaccaacctggtgtca
gaaatggcttcaggtttcagtgagaagtcgggttgggctcgaatgacaacggcatcaaga
ggtgaagcaggaccaagaggaattccaggagcatccggggcaccaggtccacctggtggt
cagggaatcccaggagaggctggagatccaggacctatgggtgatccaggccaccgaggg
cctgatggacctccaggaagaccaggacctgatggagaacctggacctgcaggctcggca
ggagaaaaaggatttccaggatcagcgggtgcaagagggttccccggactccccggtctt
cctggattgaaaggccacaaaggaagttctggtcttgatgggccaaaaggcgagtccgga
gcagttggtgctaagggtgcatctggtactcctggtccaatgggtcctcctggcccacag
ggggcggctggtttgcaaggtgaaagaggcagaattggaccaactggtcctgtgggcaag
cgtggtacaccaggccatgttggcaaacctggacctctgggtccaataggaattccaggc
atgccaggatttcccggtaatccaggaaacaagggtgaagccggtccaacaggagtgaga
ggaagtcgagggcagcagggacccagaggagatgctggacgagcaggaccagctggaccc
acaggacagcagggtgctgcaggacctgatggagctccaggagctcggggttcatctgga
ctagcaggtgttcagggtccaccagggtttgcaggaccagctggtcctcctggcccgcaa
ggaaccacaggggcaacaggaccaaaaggccaactgggtgatggtggatttcctggactc
aaaggagaacctggactcaaaggagaaagaggtgaccatggtcttccgggtccattaggt
cccatgggagaggatggaaagcgtggacccagaggtgatgctgggtccattgggcctcca
ggaccagcaggagagacaggaccaccaggaaacagaggtttccccggtgcagatggtttg
ccgggccaaaagggagctcaaggtgaaagggggctaacaggatcgcccggtggtaaaggt
ttaattggcgacccaggacgtgatggagaaccaggtttaactggagcacggggtctcaca
ggaccaattggtgctcagggagcagagggcagaccaggaccaatgagcttagcaggagaa
gatggaaaaccaggcccggctggttctactggaaaccgaggaccagctggaaacatgggt
ctgccgggaccaaagggctttgctggtgatgctggtaagattggggaggctggaagtcct
ggacctccaggtcaaaggggagtaaatggaaaagatggagagacaggagctgctggtcca
cctggtccagctggtcctgcaggaaagagaggtgaacagggacctcaaggagtgagcggt
tttcagggtttgcctggaccaccgggaccacctggagagggtggaaaaccaggtgatgag
ggtcttgctggagaagttggtgctgtaggaggaacaggtccgagaggagaaagaggccca
ccaggagaaaggggtgaaactgggcctaacgggctgttgggaccaaaaggaggtccagga
gcaccaggatcagatgggcccaagggtagcccaggtccaaagggtgctggtggagagcca
ggtggtccaggacttcaggggatgccaggagagagaggcataccaggaccttctggacca
aaaggagatgctggttctgttggtgagaaaggacttgaaggaaaagcaggagctgatggt
gcaagggggcttgctggttctgttggacctgctggtcctactggaccaaatggagaaaag
ggtgaaattggcccaccaggaccaacaggtcgccggggatcaagaggaggacctggttct
acaggtgatcccgggccaattggggctgctggattttctgggcctcctggcccagatggt
cagcctggggtcaaaggtgaaacaggagagcctggtcagaaaggagaaacgggagctcct
ggaccacaagggacggctgaaaaaccaggggagcagggtcctgttggtgtgacggggctg
aaaggtggcagaggaacacagggtccagctggatctcctggttttcctgggctgcctgga
aaagttggtccccctggtcccagtggtgctgttggggcagatgggcctataggtgttcca
ggaaagaagggtcttcctggaatccgaggagagaatggagctctgggacgtcagggcgaa
agtggacctcctggtccacaaggcactcctggagagaaaggggaatcaggagaggacggt
cctccggggcctgatgggcctccaggaccagctggcacctcaggacagcgaggaattgtg
ggtcagcctggagtcagaggagaaaggggcttgatgggactctctgggcccgctggtcca
ccaggaaaaacaggaacgactggagctcaaggatccaaaggtccagctggtgtgatcggt
ttaccgggacccactggaccaagaggagacgctggccctgagggtgttgctggagcagag
gggtcccctggtaaagatggtcttgtaggagaaaggggcgataaaggaaacccaggtcca
gagggtctacctggtgcttctgggtctccaggtaatgaaggcccagtgggatttactggc
ggtcctgggcaaatgggtgcaaatggagaaagaggtcctccaggaccccaaggacaacct
ggcattcgggggaaagtgggtcctcaaggaccacaaggagacaaaggaggagctggagag
caaggagagaggggtcagaaaggtcacagaggctttactggactccagggtcttccagga
atcactggtgccacaggagatgcaggagagcgaggaatagttggaccagctggacagagg
ggacctcctggtgttgtgggtcctcctggaaaagagggaaacatcggccaccctggagcg
gcgggtgctcctggaagcagaggaaccagcggagacatcggagctcagggccctcctgga
gaacctggaccacctggtcctccaggctcccctggacctcctaccacagctgtggaggag
ctcttttcactggattacgaggggaatggtgatgttcaggaaggtgtaggcgttgcagaa
tacgaccacgcagaatacgacgttgctgcggatcctcctcctcctccagagttcaatgaa
gatgaagctctgcccaataagaacatcatgcatgctgaaacgggcatccgagccacattg
aagaccctcagcgggcacctccagaaccttcgcagtccagatggcagcaagatgaaccct
gcaaaaacctgccaggacatcaagcagtgctaccctcagaaaaacagcggggattactgg
ttggatcccaaccaaggaagcgccaaagacgccatcagagtcttctgcaacatggagact
ggtgaaacctgcatctctgccaatccaaacaacattcctcgtaaagcctggtggacaaaa
tctagtcccagtcccaaccaaccgctttggtttgaagctgatatgaatggtggaaccaaa
ttcctctatggcaacaaggaagagcagcccaacgtggtggccgttcagatgaagctgctg
cagcttttatcgaaggagtctcaccagaacatcacctaccactgcaagaacagcgtggcc
tacaaagaccagaacggcagcttgaagaaggctctgatcctccgaggcgctaacggccaa
gaactcagagctcagggcaaccccaggaccagatacaccgtcatcgaagacagctgctct
acatcaaatggacagtggggcaagacggtgatagagtacaggactaaaactgccaccaag
ctcccggtggtggacttggcacccctgggcgttgggaagcctgatcaagagtttggtgtg
gacatcggccctgtgtgcttttcataa
DBGET
integrated database retrieval system
