Austrofundulus limnaeus (annual killifish): 106522728
Help
Entry
106522728 CDS
T06063
Name
(RefSeq) collagen alpha-1(XI) chain-like
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
106522728
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
alim00536
]
106522728
Glycosaminoglycan binding proteins [BR:
alim00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106522728
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
106522728
NCBI-ProteinID:
XP_013871317
UniProt:
A0A2I4BU84
LinkDB
All DBs
Position
Unknown
AA seq
1736 aa
AA seq
DB search
MMDQWSLTRHTWMLLLLLHVHYFYFSRAANPIDILKVLELSEDMEGVSLEAGLCTSRNGR
QETDLSFKINKKIQLSAPTKQLFPDSPFPVNFSLMTTVKAAKGSQVFLLSLYDTQGTQQL
GLELARSPVFLYEDHEGRPTPELYPIFRKINLADGKWHRVAYSVEGQAVTLYLDCEKVDT
LDLLRGQDPRVSTDGVTVFGTRLLDEGVFEGEIQQLLLVDDPRAAESYCQDYIPDCDAPL
PYDSILTPTEETEGTPKKRVVEEFEEFDYSDLYEDISVSSVTSGPNVTEYEIVEYEDYDN
TTNYYHTNEYEYEEEYDERYGPAQRERGYSLDTQNLPEKGQKGEQGILGEGTQITGPYGP
PGPEGEPGPPGITGPVGPRGDPGELGPPGRPGLNGADGIPGPPGNIMLIPFQSGGDPGTG
AVVSAQEAQAQAILQQTKLAMKGPPGPLGLRGRPGPLGASGPTGLKGSSGDMGPPGSPGL
SGIPGQNGRPGKRGRAGADGGRGAIGETGAKGDRGFDGLPGLPGNKGHKGDRGKPGPTGS
AGEPGEKGSQGPPGPRGQPGDAGPRGLNGPRGRPGPPGLPGIRGIDGVQGSKGNIGPAGE
IGAPGQQGNPGIVGFPGPQGLVGLPGEKGPQGKKGMRGLPGNDGPPGHPGREGTPGEKGL
PGPLGVQGPVGYPGQRGVKGADGIRGLKGSKGEKGEDGFPGAKGEMGAKGDVGDNGPLGV
RGEDGPEGPKGQLGPQGEPGPAGISGEKGKLGVPGLPGYPGRQGPKGSDGFPGAVGAAGE
KGKKGPAGQAGGAGQRGSNGARGARGARGPTGKPGEKGTSGHDGPPGSPGERGPQGPQGR
NGEPGPKGTSGPAGKDGLPGHPGQRGEPGFQGKTGPPGPPGVVGPQGKSGEPGPTGDRGH
PGAPGVPGEHGLPGAAGKEGGKGDPGLPGTSGKNGPPGLKGFRGSRGAPGIMGPPGLKGA
SGPGGSPGAIGPTGERGPPGPAGAIGQPGRAGAIGGPGPMGEKGEPGEKGPIGLSGQDGD
QGPIGMPGATGPIGPPGDDGDKGEQGGPGQKGSKGDKGEAGPPGPTGTQGPVGQPGLPGV
DGLPGLRGQQGMYGPKGDEGSRGFKGAKGPRGLQGMPGLPGEKGESGHVGLMGPPGQQGP
VGAQGPIGGQGQNGRPGMIGQPGAVGEKGEDGEAGDPGPVGIPGRIGDKGDQGEKGDTGP
PGAAGPPGAKGPPGEDGAKGNAGPIGLTGDLGQQGESGPNGVDGLPGSKGDTGDPGKSGP
PGPPGEPGPSGPPGRRGHMGKPGKEGKPGLKGTKGAPGLEGPIGKTGPIGAQGHPGKPGP
QGLRGIPGPAGEQGLNGPPGQTGPPGPMGPPGLPGLKGDPGRKGDKGHGGLIGLIGPPGD
IGEKGDRGLPGNQGLQGPKGEEGPVGPPGPPGPPGPTGLSGATGEKGSKGNQGPTGPRGD
IGPAGPPGPPGRPAIGIAPPPERGRRRRTHTVVDGAALENDDEEEMATEGGEEGWMQGDQ
AEGQDMEEVFASLSSMKVDVEGLRNPQGTYHSPARTCKELWLLHPDLPNGEYWIDPNQGC
HRDSFKVFCNFTAQGDTCLYPDKKFQSVKLAAWKGEKAGSWYSKFKKGKQFSYTGSDGDS
IHVVQLNFLKLLSATAKQMFTYHCLNSAAWLHTATYSHDHALRFRGSSGEELTHENTHYI
SALYDGCQTRSGQERTLLEFDAPVSNTLPIVDVAVSDFGKGNQKFGFQVGPVCYNG
NT seq
5211 nt
NT seq
+upstream
nt +downstream
nt
atgatggatcaatggagcttaacgcggcacacgtggatgctgctgctgctgctacatgta
cattacttctatttttcaagagcagctaatcccattgacatcctgaaggtcctggagctt
tcagaggacatggagggtgtctcactggaggcaggactttgcaccagcaggaacggacga
caggagacagacctctcctttaaaatcaacaagaagattcagctaagcgcacccaccaaa
caactcttcccagattcaccatttcctgtgaacttctcactgatgacaacagttaaagct
gcaaagggatctcaagtctttcttttgtctttgtatgacacacagggaacacagcagctg
ggtttggagcttgctcgttctcccgtgttcctgtatgaggaccacgagggtcggccaact
ccagaactttaccccatcttcagaaagatcaacctggctgacggcaagtggcacagagtt
gcctacagtgtcgagggtcaggcggtgaccctgtacttggactgtgagaaggtggacacc
ctggaccttctcagaggtcaggatcctcgggtcagcaccgatggtgtcacagtgttcggg
acgcgcctgctggacgaaggcgtgtttgagggagaaatccaacagctgctgctcgtcgat
gatcccagagcagcagagtcctactgtcaggactacataccagactgtgatgcgcctcta
ccttacgacagcatcctgacacccactgaggagaccgagggaacacctaagaaacgtgtg
gtggaggagtttgaggagtttgactacagcgacctctatgaggacatttctgtgtcctcg
gtgacgtcggggccgaatgtgacggagtacgagattgttgagtacgaagattatgacaac
actacaaactactatcatacgaacgagtacgaatatgaggaggaatacgacgagcgctac
ggacctgctcagagggaacgaggttactctctggacacacagaatctacctgaaaaagga
cagaaaggagaacaaggcattctgggagagggaacacagattacaggaccatatgggccc
ccaggacctgagggagagccgggacctcctgggatcacgggaccagtgggaccacgagga
gaccctggagagttgggtcctccagggcggccgggtcttaatggtgctgatgggatacca
ggtcctccaggaaacatcatgctcataccgttccagtcaggcggtgacccgggaacaggt
gctgtggtttctgcacaggaggctcaggctcaggccatcctgcagcagaccaagctggca
atgaagggacctccagggccactgggtctcaggggacggcctggaccactgggtgcatca
ggtcccactggtctaaaggggagcagtggggacatgggaccaccaggttctcctgggctg
tcggggatcccaggtcagaacggacgacctgggaaacggggtcgagcaggtgcagatggg
ggccgtggtgcaataggagagactggagcaaagggagacaggggctttgacggcttgcct
ggtcttcctggaaacaaaggacacaagggagacagagggaaaccaggccctacaggttct
gcaggagagccaggagaaaagggctcccagggaccaccggggccaagaggacaaccaggt
gatgctggtcccagaggtctgaatggccccagaggtcgccccggacccccaggtctgcca
ggtattcgaggaatcgatggagttcaaggttcaaaaggaaacatagggccagcaggtgaa
attggagcacctggacagcaaggcaatcccgggatcgtgggttttcctggtcctcagggc
ttagtaggactgccaggagagaagggacctcaagggaagaaagggatgcggggcttacct
ggaaatgacgggcccccgggtcaccctggaagagaaggcactcccggtgaaaaaggactg
ccgggtcctctgggagtccaagggcctgtgggataccctggacagcgaggagtaaaggga
gcagatgggatcagaggcttaaaagggagcaaaggtgaaaagggtgaagatggttttcct
ggggccaagggggagatgggagcaaagggggatgttggagacaatggacctctaggggtt
cgaggcgaagatggacctgaaggccctaaaggccagttgggtcctcagggggagcctggt
cctgctggaatttcaggggagaagggaaaactgggagttccaggactgccaggatatcca
ggacgrcaggggcccaaaggttctgatggtttcccaggtgcagtgggagctgcaggagag
aaaggaaaaaagggacctgcaggccaggcaggaggtgcaggccagaggggttcaaatggc
gcccgaggtgccaggggggcgagaggcccaactgggaaaccaggcgaaaagggcacctca
ggacacgatggccccccaggatctcctggagaaaggggacctcaaggaccgcaaggaaga
aatggagaacctggccctaaaggaacaagtggcccagctggaaaggatggacttccaggt
cacccaggtcaaagaggagaaccgggcttccaaggaaagacaggacctccaggacctcca
ggtgtggtgggaccgcagggcaaatcaggagaacctggcccaacgggagaccgaggtcac
ccaggagcaccaggtgtgcctggagagcacggtttacctggagctgctggaaaggagggc
ggaaagggggatcctggtttacctgggacatctgggaagaatggtccaccaggtctgaaa
ggcttcagaggaagcagaggagcccctggaatcatggggccgcctggtctgaaaggagct
tcaggacctggtggatcaccaggagccattggaccaacaggagaaaggggacctcctgga
ccagctggcgccattggacaacctggtcgggctggagccattggaggacctggaccaatg
ggagagaagggcgagcctggagagaagggaccgattggactttcaggtcaagatggggat
caaggaccaatagggatgcccggagctacgggccctataggccctccaggagatgatggg
gataagggagaacaaggaggacctggacaraaaggaagtaagggggacaaaggcgaagca
gggcctccaggccctactggcactcaggggccagttggtcagccaggactyccaggtgtg
gatggcttgccaggtcttcgaggccagcagggcatgtacggtccaaaaggtgatgaagga
tcacgtggctttaagggcgccaagggaccaagaggattacagggaatgcctggcctgccc
ggagaaaagggtgagagcggacacgttggcttaatgggtccaccagggcagcaaggccct
gttggtgctcaaggtccaattgggggacagggacaaaatggtagaccaggaatgatagga
caaccaggtgccgtaggggagaagggagaggacggtgaggcaggtgaccctggaccagtt
gggatcccaggaagaataggagataaaggagaccagggggaaaagggggatacgggccct
ccaggagcagctggtcctccaggagccaagggccctccaggggaggacggagccaagggc
aatgctggtcccatcggtctgacgggtgacctcggacagcagggagagtctggacccaat
ggtgtagatggcctcccgggatctaaaggcgacaccggagatcctggaaaatctggacca
ccaggaccaccaggtgaacctggaccatctggaccgccagggcgaaggggtcacatgggg
aaacctgggaaggaaggcaaaccgggtctgaaaggaacaaagggtgctcctggactggag
ggacctattggaaaaacagggcctataggtgctcaagggcatcctgggaaaccaggtcct
cagggcttgagaggaatccctggccctgcaggtgagcagggtttaaatggaccaccaggt
cagacaggaccaccaggtcccatgggtccgccaggtttaccaggactaaaaggagaccct
gggaggaaaggagacaagggtcatggtggtttgataggtctgataggacctccgggagac
attggagaaaaaggagacagaggacttccaggaaaccaggggcttcaaggtccaaaagga
gaagagggtccagttggccctcccggtccacccggtcctcctggccccaccgggctgtct
ggggcaactggtgaaaagggttctaaaggaaaccagggtccaactggtcccagaggagat
attgggcctgcagggcctccagggccaccaggacggccagcgatcgggattgcgcctccg
ccagagcgagggaggagaagaagaactcacactgtggtggacggtgcagctctcgaaaat
gacgatgaggaggaaatggccacagaaggaggcgaggagggctggatgcaaggagaccag
gcagagggtcaagacatggaagaggtgtttgcttccctctcgtcgatgaaggtggatgta
gagggtctgcgtaacccacaggggacgtaccacagccccgcccgcacctgcaaagagctc
tggctcctccacccagacctccctaatggtgagtactggatcgatcccaaccagggttgc
cacagagactctttcaaggttttctgtaacttcactgctcagggggacacctgtctgtac
cccgacaagaagttccagtcggtgaaattagcagcttggaaaggagaaaaagctggcagc
tggtacagcaaattcaaaaaaggaaaacagttttcctacactgggtctgatggtgattcg
atccacgttgtccagttaaacttcctgaagctgctcagtgccacagccaaacagatgttc
acctaccactgcctcaactccgccgcttggctgcacaccgccacctacagtcacgatcac
gcactgcgcttcagaggcagcagtggcgaggagctcacgcacgagaacacacattatatc
agtgcgctgtacgacggttgtcagacacgctcgggtcaggagaggacgttgttggagttt
gacgctccggtgtccaacacactccctattgttgatgtagctgtgtccgattttgggaaa
gggaaccagaaatttggttttcaagttggcccagtttgctacaatggttag
DBGET
integrated database retrieval system
