Austrofundulus limnaeus (annual killifish): 106523935
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Entry
106523935 CDS
T06063
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim04510
Focal adhesion
alim04512
ECM-receptor interaction
alim04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106523935 (col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
106523935 (col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
106523935 (col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
alim04147
]
106523935 (col4a2)
00536 Glycosaminoglycan binding proteins [BR:
alim00536
]
106523935 (col4a2)
Exosome [BR:
alim04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
106523935 (col4a2)
Glycosaminoglycan binding proteins [BR:
alim00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106523935 (col4a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
106523935
NCBI-ProteinID:
XP_013872967
UniProt:
A0A2I4BYZ7
LinkDB
All DBs
Position
Unknown
AA seq
1667 aa
AA seq
DB search
MQAQRKRKPINLRLLFLCLSISILXSGVHAGGKKNSGPCGGRDCSGGCKCFPEKGARGLP
GLLGPQGPXGPVGRPGDPGIQGPKGQKGDHGPGGFIGPKGSMGMTGVPGFSGIDGIPGHP
GQGGPRGRPGADGCNGTHGDSGLSGIPGFMGPPGPSGFPGRKGEKGDPLNITVYMQRFRG
DPGRPGFNGIIGPPGAQGREGNRGPQGPKGPSGPPGPPGPKGTMTKVLKGVKGEAGDIGA
QGLPGNYTNQQRQPQAGPPGKKGEKGEVGALADNKGEPGIMGFPGLRGENGANGRPGPRG
EPGEPGLNGGDGIKGERGDPGELISSGSWSSAAGPPGPPGPPGERGPKGERGPVGYQGFP
GLPGLSASDSQQQGWDFFGPFGFKGEQGDKGQQGDPGWPAIIAGPPGNEGRRGERGPPGP
KLLLEKYFAGDPGIRGRPGFAGLKGQKGDRGVCECRLGNSKRGLPGPAGEPGDAGMSGEF
GGEGDPGDQGPRGRDGQPGSPGFAGLPGPKGRKGDLTVASQKGYPGDPGDPGRDGLAGVP
GAPGPNGLPGLHGAHGLPGERPRGQQGDKGFQGQPGSPGADGFRGEPGPDIIGIKGQRGP
PGDDGLAGYHGVPGAQGSPGGCISGGDGGQVDDTGSCKTVPGPPGLPGLPGPFGLQGVPG
SLGLKGSYGEGGVRGEKGEQGEQGRGGSPGPPGFSGPRGDLGIPGRKGSVGNPGVPGASG
RYGADGEKGAHGEVLGAAPGPPGDPGQPGPQGVKGETGDQGSPGYAGMAGMPGMIGLKGS
KGPPGLAGEEGRPGPAGIYGFPGDPGRSGPPGPDGETGPPGITGERGIQGDPGPPGPVGL
KGTPGAYGDGGAIGEPGTPGDLGQPGPSGRPGLPGPKGSKGSSGMSGFDGRLGGFGQKGQ
EGLKGEIGMPGQAGLKGLLGQKGLKGESGLTGPPGKMAPQMLXDIKGAKGEDGDPGNQGF
TGPRGTKGLPGDPGFDGSHGFPGDPSNEKGFHGDPGAQGLPGVKGLPGPTGDRGIMGFDG
MSGNKGGKGSPGAYGASGEKGRKGAKGDKGLRIDLPGTPGLRGEDGFPGEPGSKGLFGIT
GDIGITGFDGIEGMKGKKGDPGLAGGPGSDGQRGTPGNQGQKGFPGSPGKDGQPGFPGFT
GVKGYPGLKGLFGLHGLKGQKGVTGTPGLDLTGPAGETGVKGQKGESGELNTQSGTPGFV
GLKGFQGVQGDFGQPGLPGFPGLVGPDGTSDKPGFSGDPGFPGTPGSQGFPGARGLPGSD
AFPGQKGVPGNTGFPGFPGAKGFQGDLGPTGYRGHHGVSGRKGGKGDQGVMGFPGHTGVK
GERGPSGPKGTTGLPGFPGQPGSQGPAPIPIKVPVERGRPGPQGILGPKGIRGEPGPRGP
PGDQGFIGPLGERGMPGVSGTPGVPGFRGDHGQLGHPGLQGTEGRRGNPGIPGLPGMPGR
SVSVGYLLVKHSQTVETPMCPVGMSKLWDGYSLLYFEGQEKAHNQDLGLAGSCLPRFSTM
PFLYCNPGDVCYYASRNDKSYWLSTTAPLPMMPVEETEIKPYISRCSVCEAPSVAIAVHS
QDTSIPQCPVGWRSLWIGYSFLMHTSAGNEGGGQSLSSPGSCLEDFRTAPFIECNGAKGT
CHYFANKYSFWLTIMNQDFHSQPASQTLKAGQLLSHISRCQVCMKNL
NT seq
5004 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcgcagcgcaagaggaaaccgattaatctgaggctgctgtttctgtgcctctcc
atctccatcctcayctccggagtgcacgcaggtgggaagaagaacagcggcccgtgtgga
ggaagagactgcagcggaggctgtaaatgcttcccagagaagggcgccagaggacttcct
gggcttcttggtcctcaaggcccagygggaccagtaggccgaccaggagatcctggtatc
caaggaccaaaagggcagaaaggtgaccacggacctggtggcttcataggtcctaaaggc
agcatggggatgaccggtgtacctgggttctctggaatcgatggcattcctggccacccg
ggacaaggtgggccccgggggaggcccggagcagacggctgtaacgggactcatggagac
tcaggactgtctggaattcctggatttatgggtcctcctggaccttctggatttccaggc
aggaagggggagaagggagaccctctgaacatcactgtgtacatgcagcgcttcaggggt
gatccaggaagaccaggattcaatgggataattgggcctccaggagcacaaggacgggaa
ggtaacagaggcccacaaggaccaaagggcccttcaggtcctcctggtcccccaggacca
aagggcaccatgaccaaagtgttaaagggagtcaaaggagaagctggggacatcggagca
caagggctaccgggaaactacacgaaccagcagcgtcarcctcaagcagggccgccaggg
aaaaaaggtgaaaaaggagaagttggggctttggcagacaacaaaggagaacctggtata
atgggatttcctggactgaggggtgaaaatggtgcaaacgggcgtcctggaccgaggggt
gagcctggtgaaccaggactgaatggtggtgacgggattaagggagagagaggagatccg
ggggagttgatttcttcaggatcctggtcttcagctgctggtccccctggaccccctgga
ccccctggtgagcgtggtccaaaaggagagagaggtccagttggataccaaggttttcct
ggactgcctggactttctgcttctgactcacagcagcaagggtgggatttcttcggcccg
tttggttttaaaggagaacaaggagacaaaggccagcaaggtgatccggggtggcctgct
atcatcgcgggacccccaggaaatgaaggacgtcgaggagaaagaggcccaccaggaccc
aaactattgttggaaaaatactttgctggagacccaggaataagaggacgccccggcttt
gcaggcttgaaaggacagaaaggtgaccgcggcgtgtgtgagtgcaggcttggaaattcc
aagcgtggtttgcctggtcctgccggcgagcctggggatgccgggatgagtggagaattt
ggtggtgagggtgaccccggagaccagggtcctcgaggaagagatggacagcctggctct
cctgggtttgctggtcttccaggtccaaagggtcgtaaaggagacctgactgttgcctca
cagaaaggatatcccggtgaccctggagatccaggaagagatggtttggcaggggtaccg
ggggctccaggcccaaatggtcttcctggtttgcatggcgctcatggtcttccaggtgaa
agaccccggggacaacagggagacaaagggttccaagggcaacctggttcacctggtgca
gacgggttcagaggagaacctggtccagacattataggcatcaaaggacagcgtggtccg
cctggagacgatggtcttgctggctaccatggagtaccaggagcacagggaagtcctggt
ggctgtatatcaggaggtgatggaggacaggtggatgacacaggctcttgcaaaactgtt
cccggacctcctggcctgcctggactcccaggaccatttggattacaaggtgttccagga
tctctgggcctaaagggttcatacggtgaaggtggagtcagaggggagaaaggagaacaa
ggggagcagggcagaggtggcagtcctggaccaccaggtttctctggacctcgtggagac
cttggaattcctggcagaaaaggttcagtaggaaacccaggtgtgcctggtgcttccggt
cgatacggggctgatggtgaaaaaggtgctcatggtgaagtattaggagcagcacccgga
ccaccaggtgacccaggacaaccgggtcctcaaggagtaaaaggcgaaactggagaccaa
gggtcgccaggctatgcaggaatggccggcatgcctggtatgataggcttgaaggggagc
aaaggtcctccaggtctggcaggagaagaggggagacctgggccagcgggcatatatggg
ttccctggtgatcctggaagatcaggtccaccggggcctgatggtgaaactggaccacca
ggaatcaccggcgagagggggatacagggagatccaggtcctccaggtccagtgggatta
aaagggacaccaggtgcttatggtgatggtggtgcaataggagaacctggcacaccaggt
gatctaggacaaccaggaccaagtggacgaccaggacttccaggaccgaagggaagcaaa
ggatcctctggcatgtcaggttttgatgggcgtctgggtggttttgggcagaagggccaa
gaggggctgaaaggagagattggaatgcctggccaagcagggctgaaaggattactaggc
cagaagggattgaaaggtgagagtgggctgactgggccacctgggaagatggctccgcaa
atgctcrttgacataaagggagccaaaggagaagatggagatccaggcaatcaaggattc
acaggaccaagaggtaccaaaggtttgcctggtgaccccggttttgatggatctcacggt
tttcccggagaccccagcaacgagaaaggttttcatggagatccaggagcacagggactg
ccaggcgtcaaaggattgccaggaccaacaggagacagaggcattatgggctttgatgga
atgtctggaaacaagggaggcaaaggaagccctggtgcttatggtgcatcaggtgaaaaa
ggaaggaagggagccaaaggtgacaaaggccttcgtatagaccttccaggaactcctgga
ctgagaggagaggatggattccctggagaaccaggttcgaaaggattatttggaataact
ggcgacattggtataactggttttgatggtattgaagggatgaagggaaagaaaggtgat
ccaggactagcaggaggcccaggctctgatgggcagagaggaactcctggtaaccaaggt
caaaaaggttttcctggatctcctgggaaagacggacaaccaggctttcctgggttcact
ggagtcaaaggctaccctggtcttaagggtctctttggattacatggactgaaaggacaa
aagggagtaacgggaacaccaggtctggatcttactggacctgctggggagacgggagtt
aaaggacaaaagggggagagtggtgaactcaacactcagtctggtactccaggctttgtg
ggtttaaaaggttttcagggggttcaaggtgactttggccaacctggactgccaggtttc
ccaggtctggtaggaccagatgggacctcagacaaaccaggatttagtggggatcctgga
tttccaggaacaccaggatcccaaggttttcctggagccagaggattgccgggttcggat
gctttcccaggacaaaagggtgtaccaggaaatacagggtttcctggattccccggtgct
aaaggcttccaaggagacttaggtccaactggctaccggggccatcacggtgtctctgga
aggaaagggggaaaaggagaccaaggagtcatgggatttcctggtcatactggtgtaaaa
ggagaaagaggaccatcgggtccaaaaggaaccactggacttccaggctttcccgggcaa
cctggcagccagggtccagctccaatacccattaaagtgccagtagagaggggccgtcca
ggaccgcagggratcctaggaccaaaggggattagaggggaaccgggaccacgaggccca
ccaggagatcaagggttcataggacccctcggggaaagaggtatgcctggggttagtgga
actccaggagtgcctggattccgtggagatcatggacagttaggacaccctggtctgcaa
ggcacagaaggtcggcgtggtaaccctggcatccccgggttacctggtatgcctggccgc
agtgtcagcgtgggctatttattagtgaaacacagccagaccgtggaaacccccatgtgt
cctgtgggaatgtccaaactgtgggatggctacagcctgctgtactttgagggccaggag
aaggcccacaaccaggaccttggtttggcaggctcttgcctcccacgctttagcaccatg
cccttcctgtactgcaaccccggagacgtttgctactatgccagcagaaacgataagtcc
tactggttgtcgaccaccgctccactccccatgatgcctgtggaggaaacggaaatcaaa
ccgtacataagccgctgctccgtgtgcgaggctccgtcggttgcgatcgccgtccacagt
caggacaccagcatccctcagtgtcccgtgggctggcgcagcctgtggattggctactcc
ttcctcatgcacacatcagcaggaaacgaaggcggaggccagtccctgtcgtcgcccggc
tcctgcctggaggacttccgcacggcgccattcatcgagtgtaacggggccaaaggcaca
tgccactacttcgccaacaaatacagcttctggctgacgatcatgaaccaggatttccac
tctcagccggcgtcacagacactaaaagcaggccagctcctttcgcacatcagccgctgc
caagtctgcatgaagaacctgtga
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integrated database retrieval system
