Austrofundulus limnaeus (annual killifish): 106524459
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Entry
106524459 CDS
T06063
Name
(RefSeq) collagen alpha-6(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim04510
Focal adhesion
alim04512
ECM-receptor interaction
alim04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106524459
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
106524459
09142 Cell motility
04820 Cytoskeleton in muscle cells
106524459
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
alim04147
]
106524459
00536 Glycosaminoglycan binding proteins [BR:
alim00536
]
106524459
Exosome [BR:
alim04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
106524459
Glycosaminoglycan binding proteins [BR:
alim00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106524459
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
106524459
NCBI-ProteinID:
XP_013873724
UniProt:
A0A2I4C187
LinkDB
All DBs
Position
Unknown
AA seq
1693 aa
AA seq
DB search
MNVLFWVLPVVILLRSARGGVKSDEPCGGLDCSGGCKCFPEKGGRGSPGPLGTIGVSGPE
GPHGMPGPQGPKGEKGHLGYKGPAGSKGDIGPLGVPGFKGSDGVPGHPGQQGSRGPPGKD
GCNGTIGDPGLPGYGTGHPGFPGFQGPTGPKGQKGEPVYISNGQGISGPPGIDGIPGFMG
PDGPPGFPGLRGPNGFPGIPGLPGPPGPMGKSGDISRGGKGDKGEMGLPGPSGSPGDGSL
RLEKPVTIYKGDKGDPGPKGIQGYPGSPGPPGLFGFPGEVGEKGIPGYPGPRGFPGFTGP
PGIPAAQGMRGDPGFIGQPGYIGPKGNQGEPGLPGPPAYVSESGTSIQGLPGDAGLSGLP
GNPGERGFSGDPGPLGQPGRFVIGSAGVPGFPGSPGPKGEKGNPGIQSYGPEGPPGSPGL
SGPPGPPGPQGPTGGLPCVIYPPVPDGPPDSPDDPRGPSGQPGLPGPRGEPGFFGFKGFK
GDLGDCDCLGGGGSVGLPGLPGPPGANGEPGLNGRKGELGDPGFPGFNGDPGPRGRPGET
GFFGPKGQKGEPYYPNLDAGVKGDQGAPGPRGPTGETGNRGRDGRPGFPGVQGPPGDGGV
GSIGEKGFQGYPGLKGRPGGPGEPGTGFAGAPGLRGEPGEPGIPGFPGSPGLPGEKGDRL
PCTIPGEIGEPGPRGLPGQPGPKGTPGFPGSPGRPGFDGSKGEKGEPGFGGQPGPQGFPG
PRGDPGIPGVPGQSIDGPRGKDGFPGLPGPKGQPGEVLGATAGIPGVDGRPGMEGNKGQP
GTPGSPGAPGFDGLSGSPGLKGERGIDGLPGITGLPGFPGEPIGATPGPPGPPGSKGQIG
SPGCPGYPGVKGERGDPGFPGPAGMKGTPGLPGINGIPGPVGPPGLPGPGTREGNPGFPG
AKGIRGLPGLMGFPGLPGRPGLPGFTGVKGQPGVPGRDGFPGTPAPSGQKGDKGFPGPPG
RPSPPGIMVKGVPGEPGSVGLQGFTGPRGDKGLPGRPGRPGLPGSSGFPDQSKGQPGQPG
FPGQPGLPGFPGPKGDFGIMGFPGMPGRTGDGGAPGFPGNPGEPGRPGPKGLPGEAFGFP
GPQGPKGQPGDSGFPGVPGNEGRPGDSGIPGGRGFFGAKGAPGQIGRPGLTGSPGFPGPS
GQPGFPGRKGTDGFPGLIGLPGGPGVKGLPGASGLDGLNGLAGPKGLPGNKGAVIGGRPG
APGSPGLKGERGVSYPGLPGFPGPKGQPGEPGAPGFSGFPGRPGPPGKQSEIFIPGPVGD
PGLPGLDGNYGFQGPPGPPGPPGPGTTQGDTGDPGLPGFPGTPGIKGEAGFRGNPGNPGN
FGFKGIAGEKGYSGLPGIKGSPGEPGFPGFNGRPGQPGSRGQKGLPGIVIGQKPEDLDQI
FGDLGLPGEIGAQGRPGKPGLPGFSGRPGPKGLPGSPGNLGRTGSAGPPGQLGDLGPPGF
PGLTGAQGPPGAVGRPGLPGGVGRSFSIGYTLVKHSQNSQVPMCPQGMAKLWDGYSLLYV
EGQEKAHNQDLGQPGSCLRRFSTIPFLYCNPSETCYYASRNDKSYWLSTTESIPMMPVAE
ESIQPYISRCSVCEAPSQAVAIHSQDLSIPMCPRGWRSLWIGYSFLMHTAAGSEGGGQSL
VSPGSCLEDFRTTPFIECNGARGTCHFFANKYSFWLTTVDPRQQFGSPPQQDTLKEGLGR
SKVSRCQVCSKLL
NT seq
5082 nt
NT seq
+upstream
nt +downstream
nt
atgaacgtcctgttttgggtcctcccggtggtcattctgctgagatctgcgcgcggaggc
gtgaagtctgatgagccatgtggagggctggactgcagcggagggtgcaagtgcttccca
gagaaaggcggcaggggttctccaggacctcttggtacaattggtgttagtggaccagaa
ggtccacatgggatgcccgggcctcaagggcctaaaggagagaagggccaccttggatat
aaaggaccagctgggtccaaaggagacataggcccactgggagtgccaggattcaaagga
agtgatggagttcctggtcaccctggtcagcaaggtagccgaggaccaccaggaaaggac
ggctgtaatgggaccataggggatcctggtctgcctggctatggaacaggacatccagga
ttccctggttttcaagggccaactggaccaaagggtcaaaaaggggagcctgtatatata
tcaaatgggcagggcatatcgggtcctccaggaattgatggcataccaggttttatgggt
cctgatggtccacctggttttcctggtctaagaggacctaatgggttccctgggatccct
ggtcttcctggtcccccagggccaatggggaaaagtggtgacatatctcgaggagggaaa
ggagacaagggcgagatgggtcttcccggacccagcggttctccgggtgatgggtctcta
agactcgaaaaacctgtcactatctacaaaggagataagggggatccaggtccaaaagga
attcaaggttaccctggaagtcctggaccacctggactttttggttttcctggtgaagtt
ggagagaagggcattcctggataccccggaccaagaggttttccaggttttaccggacct
cctggtattccagcagcacaaggaatgagaggtgacccaggttttattggccaaccagga
tacataggacctaagggaaaccaaggtgaacctggactcccaggacctccagcttatgtc
agtgaaagtggcacttccattcaaggacttccaggggatgcgggtttaagtggcctccca
ggcaaccctggtgaacgaggattctcaggagacccaggacctctaggccaaccgggtcgt
tttgttataggttctgcaggagtccctggttttccaggcagccccggcccaaaaggagag
aagggtaacccgggcatacagagctatggcccggaaggaccccctggttcccctggactc
tctggaccccctggtcctcctggaccgcagggccctactggcggtcttccctgcgtcatc
taccctccggtgcctgacgggcccccagattctcctgatgatccccgaggtccttctgga
caacccgggctgcctggtccccgaggagaaccgggtttctttggcttcaaaggctttaaa
ggcgaccttggcgattgtgattgtctaggaggaggtggatctgtggggttgcctggatta
cctggacctccaggagctaacggcgagcctggcctcaacggccggaagggtgagcttggc
gatcctggttttcctggttttaacggtgatcccgggcctcgtggtcggcctggtgagacg
ggcttcttcggtccgaaggggcagaagggggaaccgtactatcccaacttggacgctggg
gtaaaaggagaccaaggggcacctggacccagaggacccacaggggagacaggaaatcgt
ggcagagacggtcgtcctggctttcctggagtacagggacccccgggcgatggtggcgtt
ggctcgattggtgagaagggtttccaaggatacccgggactcaaaggtcgtcccggtggc
cccggtgagcccggcaccgggtttgcaggagcacctggacttcgtggagaacccggagaa
cctggtatccctgggtttccagggtcaccaggtctgcccggagagaagggtgataggcta
ccatgtaccatacctggtgaaattggagagcctggacctcgaggtttacctggacaacca
ggccctaaaggtactccaggtttcccaggaagtcctggacgtccagggtttgatggtagc
aaaggagagaagggagagcccggctttggaggccagcctggaccacagggctttcctggc
ccaagaggggaccctgggattccaggtgtaccaggacagagtatagatggacccaggggg
aaggatggttttccaggacttccaggacccaagggccagcctggagaggttcttggagcc
actgcaggaattcctggggtggatggccgacctggaatggagggaaacaagggtcagcca
gggacaccaggatcacctggagctcctggttttgatggactctcaggttctcctggtctg
aagggagagcgtggaattgacggtttgcctggtattactggtcttcctggatttccaggt
gagccgatcggggccacccccggtccgcctggacctcctggcagcaaaggacaaattgga
tcaccaggctgcccaggataccctggtgtgaaaggagaaagaggggacccaggtttcccc
ggacccgctggaatgaaaggaaccccaggacttcctggcattaatggaataccaggacca
gtgggaccccctggacttccagggccaggaactagagagggcaacccaggatttccagga
gcaaagggtatacgtggcttgccaggactgatggggttccctggtctaccaggtcgccca
ggattgccaggatttactggagtgaaaggacagcctggtgtgcctggtcgagatggattt
cctgggacacctgcaccttctggacagaaaggggacaaaggatttccaggtcctccaggc
cgaccttctccaccagggattatggtgaaaggtgtcccaggagaacctggatctgtaggc
cttcagggcttcactggacccagaggtgacaagggtctgccaggtcgtcctggccgacct
ggtctgcctggatcttctggtttccctgatcaaagtaaagggcaacctggacagccaggg
ttccctgggcagcctggactcccaggcttccctggaccgaagggggactttggaatcatg
ggatttcctggcatgccaggacgaactggtgatggaggtgcacctgggttccccggcaac
cctggagaaccggggcgacctggtcccaaaggtctacctggagaagcttttggttttcct
ggaccacaaggacctaaaggccagcctggagattcaggttttccaggtgttccaggcaac
gaaggcaggcccggtgacagtggcattccaggaggtcgaggattctttggagcaaagggt
gctcctggccaaataggacgacctggactaacaggctcccctggattccctggcccaagt
ggtcagcctggattcccagggagaaaaggaacagatgggtttcctggtctgattgggctt
cccgggggtccaggagtaaaaggtctgcctggagcttcgggtttggatggacttaatggc
ctcgctggtcctaaaggtcttccaggaaataaaggtgcggttatagggggtcgtcctggt
gcacctggtagtccagggttgaagggagaaagaggtgtgtcctaccctggattgccaggg
ttccctggaccaaagggacaaccaggagaaccaggcgctcctggtttctctgggttccct
ggacggcctggacctcctggtaaacagtcagaaatattcatccctgggcctgtgggggac
cccggccttcctggattggatggaaattatggttttcagggtcctccaggtccccctgga
ccacctggtccgggcacaacacagggtgacacaggtgacccaggactcccaggcttccca
ggaacccctggcattaaaggagaggcaggattccgtggaaatcctggaaaccctggcaat
tttggtttcaaaggaattgctggtgagaagggatattctggacttcctggcatcaagggt
tcacctggagaacctggtttccctggatttaatggacgccctggacagccagggagtcgt
ggacagaagggtctccctggaattgtgataggacaaaaacctgaggaccttgaccaaatt
ttcggagacctgggtcttcctggtgaaattggtgcacaaggaagacctggaaagcccggt
ctgcctggcttttctggacgtccagggccaaagggtcttccaggttctccaggtaatctt
ggcagaactggatctgctggacctccgggacaacttggtgatcttggacctcctggtttc
cctggactgactggagcacaaggaccccctggtgcagtgggtcgacccggcctgcccggc
ggcgttggccgcagcttcagcatcggctacactctggtgaagcacagccagaactcccag
gtgcccatgtgtccacagggcatggccaaattgtgggacgggtacagtctgctgtatgtg
gagggacaggagaaggcacacaaccaagacctcggtcagccaggttcctgcctcagaagg
ttcagcaccatccccttcctctactgcaacccgtcagagacgtgttactacgccagccgc
aacgacaaatcctactggctctccacgactgaatccatacccatgatgcctgtggccgag
gagagtatacaaccgtacatcagcaggtgctctgtgtgcgaggctccctctcaggcggtg
gcgatccacagtcaggacctgtccatccccatgtgtccccgcggctggaggagtctctgg
ataggatactccttcctcatgcacacagcagccggctccgagggcggcggtcagtctctg
gtgtcccccggctcctgcctggaagacttccgcaccacgccgttcatcgagtgcaacggg
gccaggggcacctgccacttcttcgccaacaagtacagcttctggctgaccaccgtagac
cccaggcagcagtttggctcgccgccacagcaggacaccttgaaagagggcctggggcgt
tccaaagtgagccgctgccaggtctgcagcaagctcttgtag
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