Austrofundulus limnaeus (annual killifish): 106525217
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Entry
106525217 CDS
T06063
Name
(RefSeq) collagen alpha-1(V) chain-like isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
106525217
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
alim00536
]
106525217
Glycosaminoglycan binding proteins [BR:
alim00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106525217
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
FMP27-BLTP2_C
Menin
Motif
Other DBs
NCBI-GeneID:
106525217
NCBI-ProteinID:
XP_013874823
UniProt:
A0A2I4C4A4
LinkDB
All DBs
Position
Unknown
AA seq
2014 aa
AA seq
DB search
MDTRIRWRLKRRRRDLHLSVAVILLFVVSSANSAEPADLLKILDFHNLPEGVTKTTGFCS
HRRSSQGPDVAYRVSKDAQLSAPTKQLYPGDAFPEDFSILATVKPKKGSQSFLLSVYNEQ
GIQQLGLEVGRSPVFLYEDHTGKPSPEDYPLFRGVHLADGKWHRVAISVHKQTITLILDC
KKKTTQKLLRDPHPIIDTKGIIVFGTRILDEEVFEGDIQQLMIVADHRAAYDYCEHYSPD
CEVSVPDQPQNQDPNADTKTDEYPTEGNYYYEYPYYDDIEGKPYESTSETETITRKLQVA
GEGDAVSTVKKSVRGGSGGTGSTSVSTGSTGSSSSSSSGSSSSSSSGSSSSSSSGSSSSS
SSGSSSSSSSSSSSSSSSSSSRSTSATEGEETYGDENTPYDSYDAYNNYYYDESTAAPDA
DTTGRITITDIGTGGQLDLGAGGKVDLEAGAEINKKVITAGGSTITVTSNKTGGSYSDYG
DGYDYGVDSYYTTGGVDSSSSTITIGGGSVGGGGSVSVGGGSVSVGGGSVSVGGGSVSVG
GSSSTGGGSASAGTGAGGSVSTGTDLGAGGDNDYSDLDKFKEEDITDYGDLGNIDLYEDY
EDTKVLPAETDEYYGQVDGARGEKGQKGEPAVIEPGMLLEGPPGPEGPTGLPGPPGSSGP
PGGPGDPGERGLPGRPGLPGADGLPGPPGTVLMLPFRLSSGGDSGQKGPAVSAQEAQMQA
IMQQARLAMRGPTGPMGLTGRPGPLGPPGVSGLKGESGEAGPQGPRGPMGSAGPTGKPGR
RGRSGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGHRGEPGPSGPPGAPGEDGERGDDGE
IGPRGLPGEPGPRGLLGPKGPQGPPGPPGVGGMDGHPGPKGNIGPQGEPGPPGQQGNPGA
QGLPGPQGAIGPPGEKGPTGKPGLPGMPGADGPPGHPGKEGPTGEKGHMGPAGPQGPIGY
PGPRGVKGADGVRGLKGNKGEKGEDGFPGFKGDMGIKGDRGELGPAGPRGEDGPEGPKGR
SGLPGDPGPLGPNGEKGKLGVPGLPGYPGRQGPKGSQGFQGFPGANGEKGSRGTGGKPGP
RGQRGPTGPRGERGPRGPTGKAGPKGNSGNDGPPGPPGERGLPGPQGPTGFPGPKGPPGP
PGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGDRGHPGPPGPPGEHGL
PGPAGKEGAKGDPGPAGPAGKDGPPGQRGFPGDRGLPGPVGAHGLKGNEGPQGPPGPAGS
PGERGPAGPAGPTGLPGRSGPQGPPGPAGEKGGPGEKGPQGPAGRDGIQGPVGLPGPGGP
PGPPGEDGDKGEIGEPGQKGSKGDKGEHGPPGPTGPQGPVGAPGPAGVDGEPGPRGQQGM
FGQKGDEGSRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGPPGADGP
QGPPGGIGNPGAVGEKGDAGETGEPGLQGEVGPPGPRGERGEKGEAGPAGAAGPPGPKGP
PGDDGPKGSPGPSGFPGDPGPPGEPGPAGLDGPPGDKGDDGEAGQPGSPGPTGESGPSGP
PGKRGPPGAPGPEGRQGEKGAKGESGLEGPQGKTGPVGPQGSPGKPGSEGLRGIPGAVGE
QGLPGPPGPDGPPGPMGPPGLPGLKGDSGVKGEKGHPGLIGLIGPPGEQGEKGDRGLPGP
PGTSGPKGDNGIAGPTGPLGPIGPPGLPGPPGPKGAKGSSGQTGPKGESGSPGPPGPPGP
PGDVIHPLPIQAPMKGRSRRNIDASQIMDDAATDANYKDYDDGMEEIFGSLNSLKLEIEQ
MKHPLGTQSNPARTCKDLQLCHPDFPDGEYWIDPNQGCSRDSFKVYCNFTAGGESCIYPD
KKSEGARLTTWVKENPGSWFSEFKRGKLLSYVDAEGNPIGVVQMTFLRLLSAAARQNMTY
NCYQSVAWHDQEKDNYDKAIRFLGSNDEEMSYDNNPYIRALVDGCALKKGYEKTVLEINT
PKVEQVPFVDIMFNDFGGSTQKFGFEVGPVCFIG
NT seq
6045 nt
NT seq
+upstream
nt +downstream
nt
atggatacccggatcagatggagacttaaacggaggagaagagaccttcatctctctgta
gccgtcattctgctttttgtggtgtcgagtgcaaattcagcggaaccagctgacctcttg
aagattttagattttcacaatttacccgagggcgtaacaaaaacaacgggtttctgctca
catcgaaggtcatcacaaggacctgatgtggcttacagagtatccaaagatgcccagctc
agtgcccccaccaaacagctttacccaggtgatgccttccctgaggatttctctatcttg
gccacggtaaaacccaagaagggcagccagtccttcctgttgtctgtttacaacgaacag
ggcatccagcagctgggactggaagtgggacgctcccctgtcttcctgtacgaagaccac
acaggaaaacccagtccagaggactaccccctcttcagaggagttcaccttgctgatgga
aagtggcatcgagtggccatcagtgtgcacaagcagaccatcacccttattttggactgt
aaaaagaagaccacccagaagctgctccgggacccacaccccatcattgataccaaagga
attatagtgtttggaacaaggatacttgatgaagaagtctttgagggagacatccagcag
ctaatgattgtagcagaccaccgggctgcatacgactactgtgagcactacagccccgac
tgtgaagtgtcagtacctgaccagccacagaaccaggaccccaatgcagacacaaaaaca
gatgaatatcctacagaaggaaactactattatgaatacccttattacgatgacatcgaa
gggaagccctatgaatccacctccgaaacagagacgatcacaagaaaactccaggtggca
ggtgaaggtgatgcagtgagcacggtaaaaaaaagtgtgagaggcggttctggcggaact
ggctccacttctgtttccaccggctccaccggctcatcatccagctcatcatccggctca
tcatccagctcatcatccggctcatcatccagctcatcatccggctcatcatccagctca
tcatccggctcatcatccagctcgtcatccagctcgtcatccagctcgtcatccagctcg
tctcgcagcacttcagctacagaaggagaagaaacgtacggagacgagaacaccccctac
gacagctacgatgcctacaataactactactatgacgagtccaccgctgcacctgatgct
gacaccactggacggatcaccatcactgatattggcaccgggggccagttggacctggga
gctggagggaaggtggacctggaagctggcgctgaaatcaacaagaaggtcatcaccgct
ggaggaagcacaataacagtcaccagcaataaaacaggtggttcctacagtgactatggg
gatggttacgactacggagtggacagctactacacgaccggtggagtggacagcagcagt
tctaccatcaccatcgggggtggctcagttggaggtggtggttctgtttccgtaggaggt
ggttccgtatctgttggtgggggttctgtttctgtgggaggaggttctgtatctgtcgga
ggatcttcttccactggaggtggatcagccagcgctggcactggagccggcgggtccgtc
tccaccgggacagacctgggtgcgggtggagacaatgactactcagacctggataagttc
aaggaggaggacatcacagattatggcgatttgggaaatatcgacttgtacgaagactat
gaggacaccaaagtgctgcccgctgagaccgatgagtactacggacaggtggacggagct
cgtggtgagaaaggacagaagggagaacccgctgttattgagcctggaatgctgttggag
ggtccgccagggcctgaggggccaacaggtctccccggacccccaggttcttctggccca
ccaggcggtcctggagatcctggagagagaggtctgccgggtcgtcctggtcttcctggt
gctgatggtctgccaggaccccctggaactgttctgatgctgcctttcagactcagttct
ggaggagattctggacagaaaggaccggctgtttcagcacaggaggcccagatgcaagcc
atcatgcagcaggccaggctggctatgcgtggacccacaggtccaatgggattgactggt
agacctggtcctctgggtcccccaggggtttcaggactgaagggagagtctggagaagca
ggacctcagggacctcgtggacctatggggtctgctggacccactggaaagcctggcaga
aggggtcggtctggttcagatggtgcaagaggaatgcctggacagactggaccgaaggga
gacagaggttttgatggtttggctggacttcctggtgaaaaaggacacagaggggaacct
ggcccctctggacctcctggtgctcctggagaagatggagagaggggggatgatggagag
atcggacccaggggacttcctggtgaaccggggccccgcggtttgctgggaccaaaagga
cctcagggacctcccggaccacctggtgttggtggaatggatggccaccctggacccaaa
ggaaacatcggaccccaaggagagccgggccctcctgggcagcaaggcaaccccggtgct
cagggactcccagggccacaaggagcgattggacctccaggagagaagggtccaactgga
aaaccgggtcttccaggaatgccaggagcagatggtccaccgggtcacccaggaaaagag
ggtccaactggagagaaaggacacatgggcccagctggccctcaaggacccattggttat
cctggaccccgaggcgtaaagggagctgacggtgtgcgcggcctcaaaggaaacaaaggt
gaaaagggtgaagacggcttccccggctttaagggggacatgggaatcaagggtgacagg
ggagaacttggaccagctggacccagaggagaagatggtcccgaggggccaaaaggtcgc
tcagggctcccaggggatcctggtccacttggacccaatggtgaaaagggtaaacttgga
gttcctggattaccaggatacccagggagacaaggaccgaagggatctcagggtttccaa
ggcttcccaggcgctaacggagaaaaaggatctcggggaacaggaggaaagccaggccca
cgcggacagaggggaccaacggggcctagaggagaaagagggccgagaggaccaacagga
aaagctgggcccaaaggtaactcagggaatgatggcccaccaggacctcccggtgagagg
ggtttaccaggacctcagggaccaacgggatttccaggaccaaagggtccacctggaccc
ccaggaaaagatggactgcctggacatcctgggcagagaggagagactggattccaagga
aagacgggtcctcctggtcctccaggtgtggtcggacctcagggaccaacaggtgaaact
ggaccaatgggagatcggggtcaccctggacctccaggcccacctggtgagcatggcttg
cctggaccagctgggaaagaaggcgctaagggagaccctggtcctgctggcccagcaggt
aaagatggcccccctggccaacgaggtttccctggagacagaggtcttcctggtcctgtg
ggggctcatggcctgaaagggaatgagggtcctcaaggcccacctggtcctgctggttct
cctggtgagcggggtcctgctggaccagctggacccacaggtctgcctggacgttccggc
cctcagggacctccgggccctgctggagagaaaggtggacctggagagaaaggacctcaa
ggcccagctggaagagatggtattcaaggacctgtgggtctgccaggacctggaggacct
cctggaccaccaggagaggatggagacaagggagagatcggagaacctggacagaaagga
agtaaaggtgataaaggagaacatggtcctcctggtcctaccggtcctcaaggccctgtt
ggagctccaggtcctgctggagtagatggagagccaggtcccagaggtcagcagggtatg
tttggtcagaagggagacgaaggctcgagaggtttcccaggacctccaggtccagttggg
ctgcagggtctgccgggtccacctggagagaaaggtgaaactggagacgtgggtcagatg
ggtccacctggccctcctggtcccagaggcccctcaggacccccaggagctgatggccct
cagggacctcctggtggtattggaaaccccggtgctgtgggagaaaagggcgatgctggt
gaaacaggagaaccaggtcttcagggagaagttggcccaccaggtccaagaggagagcgt
ggagagaagggagaagctggtcctgctggtgctgctggacctcctggtcctaaaggtcct
cctggagatgatggacccaaaggcagccctggtccaagtggtttccctggagacccaggc
ccacctggagagcctggtccagctggtttagacggtcctcctggtgacaagggagatgat
ggagaggccggtcagcctggttcaccaggacccactggagagtctggtccctctggacca
ccaggaaagagagggccacctggagcaccaggacctgagggaagacagggagagaaagga
gccaagggagagtctggtctagaaggtccacaaggaaagacaggacctgttggccctcaa
ggatcacctggaaagcctggttctgaggggcttaggggtatccctggtgcagttggcgag
caaggacttcctggtcctccaggcccagatggacctcctggacccatgggtcctcctggt
ttacctggtctgaaaggagactctggtgttaaaggagaaaagggtcatccgggtcttatt
ggtcttattggacccccaggtgaacagggagaaaaaggtgacagaggtcttccaggaccc
ccaggaacctcaggtcctaaaggagacaatggtattgctggtcctacaggtccacttggt
cccatcggtccccctgggttacctggtcctccaggtcctaaaggagccaaagggtcatct
ggtcaaacaggtccaaaaggagagagtggttcacccggacctcctggtcctcctggccct
cctggtgatgtcatccacccactccccatccaggctcctatgaagggcagaagccgaagg
aacattgatgccagccagatcatggatgatgctgctacagatgccaactataaagactat
gatgacggcatggaggagatctttggctctctcaactcattaaagttagagatcgagcag
atgaagcatccactaggcacacagagcaaccctgctcggacctgcaaagacctacagctt
tgccacccagacttccctgatggtgaatactggattgatccaaaccagggttgctcacgg
gactccttcaaggtttactgcaacttcacagcaggcggagagagctgcatctacccagat
aagaagtctgagggggctaggctcacaacctgggttaaggagaatcccggttcctggttc
agtgaattcaaacgtggtaaactgctttcctatgtggatgccgaaggaaaccccattggc
gtggtccaaatgaccttcctaaggttgctaagtgcagcagcccgccagaatatgacatac
aactgctaccagtcagtcgcgtggcacgatcaggagaaggacaactatgacaaggccatc
cgcttcctgggctccaacgatgaggagatgtcttatgataacaatccctacatccgcgca
ctggtcgacggctgcgcgctgaaaaagggctatgaaaagacagtacttgagatcaacacg
ccgaaggtggagcaggtgccgtttgtggacatcatgttcaacgactttggcggttccacg
cagaagtttggattcgaagtgggacctgtctgtttcatcggctaa
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integrated database retrieval system
