Austrofundulus limnaeus (annual killifish): 106525473
Help
Entry
106525473 CDS
T06063
Symbol
col9a2
Name
(RefSeq) collagen alpha-2(IX) chain
KO
K08131
collagen type IX alpha
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim04510
Focal adhesion
alim04512
ECM-receptor interaction
alim04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106525473 (col9a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
106525473 (col9a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
106525473 (col9a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
alim00535
]
106525473 (col9a2)
Proteoglycans [BR:
alim00535
]
Extracellular matrix (ECM) proteoglycans
Others
106525473 (col9a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
106525473
NCBI-ProteinID:
XP_013875185
UniProt:
A0A2I4C5C2
LinkDB
All DBs
Position
Unknown
AA seq
688 aa
AA seq
DB search
MAAVSGLLKTWVTLQTLCLALAQVSGPPGPPGPPGPPGTPGSDGIDGEKGPLGPPGPPGQ
KGEPGQPGPNGPPGKNGIDGLIGAKGDRGPIGRPGSKGQPGPSGEPGPPGVGLPGLAGTP
GPIGLPGQIGQPGPKGIMGPPGPPGLPGPSGKPGPPGKFIGLDEGSADFQCPLNCPAGPK
GPQGLQGVKGHKGRAGVLGDPGSIGKVGSKGDIGISGEQGIPGPPGPMGLRGYPGMMGPK
GEAGPRGYKGIGGPVGIPGPPGEEGPRGPPGEPGDRGDKGSRGIQGPQGAVGKKGVNGLP
GIDGKDGTPGVPGIKGAPGQPGMPGPPGPQGAAGLPGSPGAKGEAGVKGETGPRGPAGLA
GAPGPLGEPGIPGEPGMAGVPGPKGDRGQRGPVGPQGAVGKPGSKGERGPTGVPGAQGLP
GIKGDKGFQGKVGSKGGIGDPGVEGLAGEKGEKGISGEPGPKGQQGIRGDLGHNGPTGDP
GKPGDQGPSGLSGPRGLNGERGVPGMPGIPGPPGRDASDQHIIEVVLKMMQEKLTAVAVS
AKRAVLGGAGVMGPPGPPGPPGSPGSQGPHGLPGPRGVPGIIGAHGQIGNTGLKGKRGAK
GQKGDPGKAHPGPPGPPGIQGPPGVDGVARNGRPGERGPQGVAGEAGRPGKAGPPGLPGY
CEAAMCLAASAYTSQRLQEPGTIKGPNV
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atggctgctgtctctggcttgctgaagacctgggttacgctgcagaccttgtgcctggct
ctggctcaagtgagtggtccacctggacctccgggaccaccaggccctcctggcactcct
ggatcagatggcattgatggggagaaagggccacttggaccacctggtccaccagggcaa
aaaggcgagccaggtcagccaggacctaatgggcctccagggaagaatggcattgatggt
ctgattggagcaaagggggatcgcggtccaattgggagacctggctcaaagggtcaacca
ggtccaagtggtgaacccggacctccaggagtgggccttccaggtctggctggcactccg
gggccaattggtctcccaggtcaaattggacaacctggtccaaagggcataatgggacca
cctggacctccaggacttccagggccttcaggcaagccaggacctccaggaaagtttatt
ggtttagatgaaggcagtgcagatttccagtgtcctctgaactgcccagcaggacctaaa
gggccccagggactgcaaggtgttaagggacacaaaggaagagctggtgttcttggggac
cctggcagcatagggaaagtgggatccaagggagatataggcatctctggggaacaaggc
ataccaggaccaccgggtccaatgggccttagaggttacccaggaatgatgggtcccaaa
ggagaggctggacctcgtggctacaagggcatcggtggacctgtaggaatccctggaccg
cctggtgaagagggacctaggggaccacctggagagccaggagacaggggtgataaaggc
agccgaggcattcagggtcctcaaggtgcagttggcaaaaagggagtgaatggtctgcca
ggcattgatggaaaagacggcacacctggagtacctggaatcaaaggtgctcctgggcag
cctgggatgccaggtcctcctggtcctcaaggagcagcaggattaccaggatccccaggg
gctaaaggagaagctggagttaagggggaaacaggccctaggggtcctgctggcctggct
ggtgctcctggacctttgggtgagcctggtattcctggtgagcctggtatggcaggggtc
cctggacctaagggagacagaggccagcggggaccagtagggccacagggtgcagttggc
aaacctggaagcaagggagaaagagggcccactggtgttccaggtgcacagggccttcct
gggattaagggagacaagggctttcaaggcaaagttggttcaaaggggggaataggtgac
cccggtgtcgagggactggccggtgagaaaggtgaaaagggtatatctggtgaacctgga
cctaaaggacagcaaggaattaggggtgacctcgggcacaatggacccactggagacccc
ggtaagcctggagatcagggcccatcagggctatcaggtccaaggggacttaacggcgag
cgaggggtacccggcatgccaggcattccggggccaccaggacgtgatgcatctgaccag
catattattgaagtggttctaaagatgatgcaggagaagcttacagcggtagcagtgagc
gcaaagagagccgtgcttggtggtgcaggtgtaatgggacctcctgggcctcctggacct
ccaggatcacctggctctcagggtccacatggtttaccaggtccccgtggggtacctggt
atcatcggagcgcatgggcagattggaaacacagggctcaaagggaagagaggggcaaag
gggcagaaaggagatccaggtaaagctcacccaggaccaccagggcccccaggaatacaa
ggtcctcctggtgttgacggtgtagctcgaaatggaaggcctggtgagagaggacctcaa
ggagtagccggggaggccggtcgccccggtaaggcgggacccccaggtctcccagggtac
tgcgaggcagccatgtgtctggctgcgtctgcatacacctcgcagagattacaggagccg
ggaacgatcaaaggacccaatgtttag
DBGET
integrated database retrieval system
