Austrofundulus limnaeus (annual killifish): 106526406
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Entry
106526406 CDS
T06063
Name
(RefSeq) collagen alpha-1(XI) chain-like
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
106526406
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
alim00536
]
106526406
Glycosaminoglycan binding proteins [BR:
alim00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106526406
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
106526406
NCBI-ProteinID:
XP_013876464
UniProt:
A0A2I4C903
LinkDB
All DBs
Position
Unknown
AA seq
1857 aa
AA seq
DB search
MEMQRWSSRWKTKRWILDSAVLVTLSLVLQTAEVRAAEPVDVLKVLAFQNYPEGVSKTSG
FCSNRRASQPDSAYRVSRQIQINAPTSQLFPGGVFPEDFSILTTVRPKSGLQSFLLSVYN
EQGVQQLGVEVGRSPVFLYEDQSGRPTPEDYPLFRGLNLVDGKWHRVAISVEKKTVTVVV
DCKKKITKDLLRSDQASISTNGITVFGTRILDEEFFQGDIQQLLIVADPKAAYDYCEHYS
PDCDTPHRDSLQAQEPEEYTTDDLDYSQFYDYAEGPTISPTDEYSEQQRKKRSVAVKKKT
SRKSVSKAEPFRSSPAKRSSAKRSRMFGYQATAPHRGASRLNNVEGDYNTDIDYGTVDET
QTQTPAATSGPHQAVGEEFVGAFVTEAPPVAPEPGAVPETGDGSDAGAKTFDFKEYDLNE
LDLGEVDKKLYDYGAYDDYGTAQPKAPAAYDDEVGLGVAAETDVSESSVAGPEAAYGQKG
EKGEPAVIEPGMLIEGPPGPAGQAGLPGPPGLQGPPGVAGDPGDRGPPGRPGLPGADGLP
GPPGTMLMLPFRFGGDGEKGPVVSAQEAQAQAILSQARLAMRGPPGPMGLTGRSGPVGPP
GSGGLKGEAGDPGPQGPRGIQGPPGQMGKSGKRGRAGADGARGMPGEPGSKGDRGFDGLP
GLPGEKGHRGEVGPMGPPGAPGEDGQRGEDGEIGPRGLAGESGPRGLLGPRGPPGPPGAP
GVAGVDGPPGPKGNMGPQGEPGPPGQQGIPGTQGLPGPQGPIGPPGEKGPQGRSGLPGLP
GADGPPGHPGKEGPAGEKGAQGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFP
GFKGDMGIKGDRGELGMHGPRGEDGPEGPKGRAGPNGESGPIGPAGEKGKLGVPGLPGYP
GRQGPKGSSGFPGFPGANGEKGARGIAGKAGPRGQRGPTGPRGARGARGPTGKPGPKGTA
GNDGPPGPPGERGPQGPQGPVGFPGPKGPPGPAGKDGLPGHPGQRGETGFQGKTGPPGPG
GVVGPQGPTGETGPVGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGSAGKDGPPGLR
GFPGERGLPGATGPPGLKGGEGPQGPPGPVGSPGERGPAGQAGPIGLSGRPGPQGPPGPA
GEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPQGPPGEDGDKGEAGEPGQKGSKGDKGEQ
GPPGPAGLQGPIGAPGPAGADGEPGPRGQQGMFGQKGDEGPRGFPGPPGPIGLQGLPGPP
GEKGENGDVGPMGPPGPPGPRGPQGPSGADGPQGPPGGVGPMGSVGEKGEQGEAGNPGPP
GEPGTGGPKGERGEKGEAGPPGAAGPAGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGVA
GTDGEPGEKGEDGESGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAE
GPAGKTGPVGPQGPPGKPGPEGLRGIPGPVGEQGLPGAPGQDGPPGPMGPPGLPGLKGDP
GSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGTPGGKGDSGISGAAGPLGPPGPPGLP
GPQGPKGAKGSSGPAGPKGDTGSIGPPGPPGPPGEVVQPLPIQSPKKTKRSSDLQSDMAA
TFMDYGMEDIFGSLNNLKQDIERMKYPMGTQNNPARTCKDLQLCHPEFPDGEYWVDPNQG
CSGDSFKVFCNFTAGGETCIYPDKKSDGVRISSWPKEVPGSWFSQFKRGKLLSYVDIEGN
SINMVQMTFLRLLTASARQNFTYSCHQSVAWHNAATDSYDKALRFLGANDEEMSYENNPY
IKAISDGCSTRKGYGKTVLEINTPKIDQVPIMDVMLTDFGDPNQKFGFEVGPVCFLG
NT seq
5574 nt
NT seq
+upstream
nt +downstream
nt
atggagatgcagaggtggtcctcaaggtggaaaacgaaaagatggattctggattcggct
gttttggtcactttaagcctggtcctgcagactgctgaggtccgagcagcagaaccagtg
gacgtcctcaaagtattagcctttcagaattaccctgaaggagtgtcaaaaacatccgga
ttctgttcaaaccgacgagcatcccagccggactcggcctacagagtctccagacagatc
cagatcaacgccccmacctcacagttgttcccaggcggagtcttccccgaggacttctcc
atcctgaccacggttcgtcccaagtccggcctccagtccttcctgctgtcggtctacaac
gagcagggggtccagcagctgggcgtggaggtgggacgctcgcccgtcttcctgtacgag
gaccagagcggccggcccaccccggaggactaccccctgttccgaggactcaacctggtt
gacgggaagtggcaccgtgtggccatcagcgtggagaagaagacggtcaccgtcgtcgtg
gactgtaagaagaagatcaccaaagacctcctgaggagtgaccaagcttccatcagcact
aacggcatcactgtgttcggcacccggattctggatgaggagtttttccagggcgacatc
cagcagctcctgattgttgctgatcccaaagcagcgtatgactactgtgaacactacagc
ccagactgtgacaccccccacagagactccctgcaggcccaggaaccagaagagtacact
actgatgatttagattacagtcagttctatgattacgctgagggaccaaccatcagccca
actgatgagtattctgaacagcagagaaagaaacgtagtgtcgccgtgaaaaagaagacg
agcagaaagtccgtcagtaaagcggagccctttaggtcctcgcccgccaaacgctcgtct
gctaaaaggtcgaggatgtttggctaccaggccacagcgccacacagaggcgcttctagg
ctaaacaatgtagagggagattacaatacagacattgactacggaactgtagatgagact
cagactcagacccccgctgccacgagcggaccccaccaggctgtgggggaggagtttgtc
ggtgcgtttgtcaccgaggcccctcccgttgctccggagccgggcgccgtgcccgaaacg
ggcgacggctcggacgccggtgccaaaacgtttgacttcaaggagtacgacctaaacgag
ttggacttgggtgaggttgacaaaaagctgtacgattacggggcatatgatgattacggg
acggcccagcccaaagccccggcggcctacgatgacgaggtggggctcggggtcgctgca
gaaaccgatgtttctgagagttctgttgctggtcctgaagcagcctacggtcagaagggt
gagaagggtgaaccggcagtgattgaacctggcatgctaatcgaaggaccaccgggacca
gccggccaagctggtcttccaggtcccccaggtctacagggaccccccggtgttgctgga
gatcctggtgacagaggtcctcctggccgccccggtctaccaggtgccgatggtttgcca
ggacctcctggtaccatgttgatgctgccgtttcgttttggtggagacggggagaagggt
ccggtggtgtccgcacaggaagcccaagcccaggccatcctttcccaggctagattggct
atgaggggccccccaggaccgatgggtttgactggaagatctggacctgtgggtcctcct
ggttcaggtggtctgaaaggtgaggcaggagatcctggtcctcaggggccccgtggcatc
caggggcctccgggtcaaatgggcaagtccggcaaacggggtcgagctggtgctgatgga
gcacgagggatgcctggagagccaggttccaagggagaccgaggatttgacggacttcct
gggctgcctggggaaaagggccacaggggggaggtggggcccatgggacccccaggagca
cctggagaggacggycagagaggtgaggatggagagatcgggcccagaggactggctgga
gagagtggtcctagaggtttgctgggaccccgtggccctcctggaccacctggagcacct
ggtgttgccggagtcgayggacctcccggtcccaaaggaaacatgggacctcaaggagag
cccggcccaccgggtcagcagggaatcccaggaacacagggtcttcctggtcctcaaggt
ccgattggaccacctggagaaaaaggacctcagggcaggtctgggttacctggattacct
ggagctgatggtcctccgggtcatcctggtaaggagggtccagctggagagaaaggtgca
cagggtccaccgggtccccaaggtcctattggttacccaggccctcgtggtgttaagggt
gctgatggtgtccgtggtctaaagggatccaaaggagagaagggcgaagacggtttccca
ggcttcaagggggacatggggatcaaaggagaccggggagaactaggcatgcatggaccc
cgtggagaggacggtccagaggggcctaaaggtcgagccggtcccaacggagagtctgga
cctattggtcctgctggtgagaagggtaaactgggagttccaggattgccaggttaccct
ggaagacaaggaccaaagggctcaagtggattccccgggttccctggagccaacggagag
aaaggagccagaggcatcgctggaaaagctggtccaagaggtcaacgaggtccaacgggt
ccccgaggggctcggggagccagaggtccaacaggaaaacctggtccaaagggcacagct
ggaaacgatggtcctccaggcccgcccggtgagagaggacctcaaggaccacagggacct
gtcggtttccctggaccaaaggggcccccaggaccagctgggaaggacgggctgcccgga
caccccggtcagcgtggagagacgggtttccaaggaaaaactggtccaccaggcccaggg
ggagtcgttggtcctcagggacccactggagagaccggtcctgttggggagcgaggacac
cctggacctccaggaccacccggagagcagggtcttccaggcgctgccggcaaggaagga
gccaagggagatcctggacctcaaggctctgctggtaaagacggccccccaggtcttcgt
ggcttcccgggagagagaggtctacctggcgccacgggcccaccaggtctgaagggcgga
gaggggccccagggtcctcctggtccagttggttctcctggtgagagaggtcccgctggt
caagctggtccaattggcctgtctggtagacctggtcctcagggacccccaggtcctgca
ggagagaaaggtgcacctggcgagaaaggacctcagggtccggctggtcgcgacggggtc
cagggtcccgtgggtctgcctggtcctgctggaccccagggcccacccggtgaggatggt
gacaagggagaagctggagagcccggtcagaaaggaagtaagggggacaagggagagcag
ggtcctcctggaccagctggtctccaaggtcccataggtgccccaggtcctgctggagcg
gatggagagcccggtcccagaggtcagcagggcatgttcggacagaaaggagatgaaggt
cccagaggtttccctggacccccaggacccattggtctgcagggtcttcctggacctcca
ggtgaaaagggggagaacggtgatgttggacccatgggccctcctggtccccctggtccc
agaggtccccagggtccgagcggagctgatggtcctcaaggtcctcctggaggtgtgggt
cccatgggatctgtgggtgagaagggtgaacaaggtgaagctggaaacccgggaccacct
ggagagcctggaaccgggggtcccaaaggtgagagaggagagaaaggagaggccggcccc
cccggagctgctggacctgccggagccaaaggaccccctggagatgatggtcckaagggt
aaccctggtcctgttggattccctggagacccaggccctcctggagagccaggtgttgct
ggaactgatggagaaccaggagagaaaggagaggatggagaatctggtcaacctggacct
ccaggtccatctggagaggccggtccacctggtcctcctggcaagagaggacctccagga
gccgccggagcagagggcaggcaaggagagaagggcgccaagggtgaagccggtgccgag
ggcccagctggtaaaacgggacctgttggccctcagggacctccaggaaagccaggtcca
gagggtctgcgtggcatccctggcccagttggtgaacaaggactgcccggagccccagga
caggatggtccaccaggtcccatgggtcctccgggtcttccaggtctgaagggtgacccc
ggctctaaaggtgaaaagggtcacccaggtttgatcggtctcatcggaccccctggagag
caaggagagaagggagatcgaggtttgcctggacctcagggtactcctggtggaaagggt
gactctggtatcagtggagctgctggacctctcggacctccaggtccacctggtttacct
ggtcctcaaggtcctaaaggagccaaaggttcatctggtcctgctggtcccaaaggagac
actggttcaatcggtcctcctggtcctcctggcccaccaggtgaggtggtccagcccctc
cccatccagtcccccaagaagacgaagcgctccagcgacctgcagtcggacatggcygcc
accttcatggactacggcatggaggacatcttcggctccctcaacaacctgaaacaggac
atcgagcggatgaaataccccatgggcactcagaacaacccagccagaacctgcaaagac
ctgcagctgtgccaccccgagttccctgatggcgagtactgggttgatccaaaccaaggc
tgctcaggagattccttcaaagtcttctgtaacttcacggccggcggagaaacctgcatc
tatcctgacaagaagtctgatggagtcagaatatcctcgtggcccaaagaggttccaggt
tcctggttcagtcagtttaaacgagggaagctgttatcctatgtggacattgaaggaaac
tcgataaacatggtgcagatgaccttcctcagactactgacggcctcagccaggcaaaac
ttcacctacagctgccaccagtctgtggcgtggcacaacgccgccaccgacagctacgac
aaggcgctgagattcttgggcgccaacgacgaggagatgtcttatgaaaataacccttac
attaaagccatctcggatggatgttcgacaaggaagggctatggaaagactgtgctggag
attaatactcccaaaatcgatcaggttccaatcatggatgtcatgttgactgactttgga
gaccctaaccagaagtttggatttgaagttggacctgtctgcttccttggctga
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integrated database retrieval system
