Austrofundulus limnaeus (annual killifish): 106528246
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Entry
106528246 CDS
T06063
Symbol
col24a1
Name
(RefSeq) collagen alpha-1(XXIV) chain
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
106528246 (col24a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
alim00536
]
106528246 (col24a1)
Glycosaminoglycan binding proteins [BR:
alim00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106528246 (col24a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
106528246
NCBI-ProteinID:
XP_013878824
UniProt:
A0A2I4CFQ8
LinkDB
All DBs
Position
Unknown
AA seq
1721 aa
AA seq
DB search
MHLGAQRTRSGHVSAAAAWNFLLLLSVCSAASGEDDYRAQGVDILHRLGLTDQSSTDSPQ
ERTASPQTTYTNVPPFLNAPLSGYGVLLDTNSIYEIPASSLFHTEFSDEFSFVISLSSWG
ASNAFLLSVKDGGDRLRFGIQLLPHRLVVYTAEQSSIYFTYSWQDGQQHAFAVGVRARSV
SFYADCGRVQQREQTLARAQTLGEPGSLFTLGRMNSKAAPFSGQLCQLDIYPSXQAAAHY
CKYLKKQCRLADTYRSPLPHSHLDIKANNHPAHSSPKSPLGLPTIRHTSTKVTTTYRALS
QRNQLVTQYSTPSPTTQLHLKEPKHISTLKPLSLQPEDHTQAPPRRQAMLDLSHSTSVTT
NENVLATGKGNQPRRDIDQSENSTEEERRPWNHQTSQVFPSLISPVRQGQVKEGLRNSFE
DSEPRPKDTRHVLEFXRRANSTTLYRENRVDTSEQHELDGSYEDTDLGVYDYGYEESEFL
YDYEDGFNGPKGEPGPPGPPGPPGLSGSPGRRGSRGPPGPHGKPGQPGPPGPKGSKGDPG
LSPGQAAAGEKGDRGPPGSPGPKGFPGPLGPKGYPGPPGPAGEQGIAGPPGEAGATGYPG
RQGLAGPQGSPGTKGIRGFIGPPGVAGPPGLEGEKGIPGPVGKPGPKGRHGVMGDVGERG
PPGPDGKQGPVGGTGINGFPGLRGDPGPEGPRGLPGMAGPQGPAGHAGLPGLKGDKGEVG
QRGDPGEMGYQGDKGAVGAPGPAGPRGKPGLPGRPGDIGAQGPPGSAGPEGFPGDIGAPG
PNGPPGPKGLQGARGPQGPPGPKGPQGDEGPLGPPGSIGPIGRAGRKGHPGEPGIEGLTG
EKGDVGNVGKIGPQGPVGLIGITGVMGVPGEKGDRGPPGPAGPVGENGPRGYPGLPGGPG
DIGMQGAPGPQGQRGTAGIGGPKGRGGPRGPDGTLGEPGPEGTKGEKGEIGPKGEPGLIG
KTGGPGERGPSGKPGKAGIPGSXGERGPHGEPGPKGPPGESGPNGEQGLEGGPGAEGEPG
AVGEPGLKGDVGPPGTDGEQGQEGLRGPPGPXGEDGPQGKDGPKGEPGEQGPAGEPGEKG
IEGEPGPQGPAGIPGKQGFSGPEGKLGPPGNRGRHGKKGEKGPPGLAGEIGSRGDLGQQG
KPGLKGARGTRGSPGQPGAMGLEGQPGLLGYPGHPGKPGPIGPPGPKGEKGYSGEDNKTP
GPPGPLGEPGSLGERGDRGEPGDEGYQGHTGPNGPRGTIGPQGLPGSPGEPGEQGPKGEK
GAPGSAGKKGARGLSGAPGTEGPTGLPGLRGPKGFPGPDGPPGLMGLQGLPGKPGRQGQR
GLVGQEGLAAMPGPRGETGLPGAPGEIGPPGQKGEPGLPGDRGPAGMKGMEGATGDQGRK
GDPGPKGQAGESGDLGIVGLQGFPGPQGPNGELGLRGIPGPKGPVGSLGFSGPVGPEGRI
GPVGKPGHRGPKGSIGEMGPQGPQGSPGPRGPPGAPGPTRNIYDDSVYXQSDSNSALRTE
IFQNMDMSQPDQNTEILKTLRYLSSIVESIKKPLGTRDNPARVCKDLLDCRHLHLKDDWF
WIDPNLGCTSDAFKVYCNFTAGGQTCLHPVASNKMVFGVEKVQMKFLHLLSSEASQSITF
HCQNDPSFTAKDTVTSTEPLHIENSKLRFQGWNKQMFEKDTLLEQHLIQDECKIQDGSWH
QSRFSFHTQDSRQLPISDIQGFPTSQDNSQQYIEIGPVCFL
NT seq
5166 nt
NT seq
+upstream
nt +downstream
nt
atgcatttaggagctcaacggacaaggagtggacacgtttccgcggctgcagcgtggaac
tttctcctgctcctgtcagtatgctcagcagcttctggagaagacgactaccgagctcaa
ggtgtggatatcctccatcgactggggcttacagatcaaagcagcacagacagtccccag
gagaggacagcctcgcctcaaaccacttacaccaatgttcccccgtttctgaatgctcca
ctttctggatatggggtgttattagacacgaactccatttatgagattccagcaagcagt
ctgttccatacagagtttagtgatgaattttcttttgtgattagcctaagctcctgggga
gcgagcaatgcttttcttttaagtgttaaagatggcggggacagactgcgttttggcatt
cagctattaccccacagactagtggtttacactgcagagcaatcctccatctacttcacc
tacagctggcaggatgggcaacaacatgccttygctgttggtgttcgagctcgttcggtg
tccttttatgcggattgtggacgggtgcagcaacgagagcaaaccctggcgagagctcag
actctgggggaacctgggagtctcttcactttgggtaggatgaactcaaaggcagctcca
ttcagtggtcaactttgccaactggatatctatccttcagsccaagctgccgcacactac
tgcaaataccttaaaaaacagtgccggctggccgacacttatcgatcgcctttgccacat
tctcatttggatattaaggctaataaccaccctgctcactcttcaccaaagtcccctctt
ggactgccaaccatccgtcatacttccaccaaagttacaacaacttacagagcgttatca
cagagaaaccaacttgtcacacagtattcaaccccaagcccaacaactcagttacacctg
aaggaaccaaaacacatttcgacactgaaacccctctcacttcaacctgaagaccacacg
caagctcctccaagaaggcaagcaatgctggatctttcccacagcacatctgtcacaacc
aacgaaaatgtcttagcaactggcaaaggcaatcagcctcgaagggacatagatcagtct
gagaacagcacagaggaagagcgcagaccctggaaccatcagacttcacaggttttccca
agtctgatatcccccgtcaggcaaggtcaagtgaaggaaggactcaggaacagctttgag
gactctgaacctcggcccaaagacacacgtcacgttctggagtttcrtcgaagagccaac
agcaccactttgtacagggaaaatcgggtcgacacatcagaacaacatgagctggatggc
agctacgaggacacagaccttggagtgtacgattatggatacgaggagtcagaattcctt
tatgactatgaagatggatttaatgggcctaaaggagagccaggtcctccgggtcctcct
ggccctcctggtttatctggttctcctgggaggagaggctcaaggggtcctcctggtccg
catggaaaaccaggacaacctggaccaccagggccaaagggttcaaagggagacccggga
ctgtctccaggccaagctgcagccggggaaaagggtgacagaggtccacctggttcacct
ggaccaaaaggatttccaggaccactgggtcccaaaggttatccaggtccacctggccca
gcaggggaacaaggcattgcaggacctcctggagaggctggagctacaggttaccctggc
aggcagggtttagctgggccgcaaggcagtcctggaactaaaggcatccgtggttttatt
ggrcctcctggagttgctgggccaccagggctggagggagagaaaggcattcccggtcct
gttggaaaacctggtcccaaaggaagacatggtgtgatgggtgatgtgggggagagggga
ccccctggtccagatggcaaacagggccctgttggtgggactggcattaatggctttcct
ggtctgaggggggacccgggcccagagggaccacgaggattgcctggtatggcgggacct
cagggcccagcgggacacgccggcctgcctggattgaaaggtgataagggtgaagtggga
caaaggggcgatccaggggagatgggatatcaaggtgacaagggcgctgtcggtgcacct
ggtcctgccgggcccagagggaaaccgggactgccgggtagacctggagatattggcgca
caaggaccacctgggtctgcaggaccagaggggtttcctggggacatcggagcaccaggg
cccaacggcccacctggaccaaagggtttgcaaggygcaagaggaccccaaggtcctcca
gggcctaaaggaccacagggtgatgaaggaccactcggcccacctggcagcattggccct
attggaagagctggaaggaaaggtcacccgggtgaacctgggatcgaaggtctaacgggg
gagaagggggacgtcggaaatgtcggaaaaatcggccctcagggtccagttggcttaatt
gggataactggggtgatgggagttcccggtgaaaagggtgaccggggacccccaggtcca
gcaggtccagttggagagaacgggccaaggggttatccaggattgccaggaggtccagga
gacatagggatgcaaggtgcacctggcccacagggacagagaggcactgcaggcatcggt
ggtccgaaaggcagaggggggccccgaggtccagatggcacgctaggagaaccaggacct
gagggcaccaagggtgaaaagggtgaaataggaccaaaaggagaaccaggacttataggc
aagactggtggtccaggagaaagaggcccttctggaaagcctggtaaggcaggtattcca
gggagcascggggaaaggggcccgcatggtgaaccaggacctaaaggacctcctggagag
tctggacccaatggagagcaaggacttgaaggtggtccaggtgctgaaggggagccaggt
gcagttggagagccaggattaaagggtgatgttggacctccggggactgatggggaacag
ggtcaggagggactcagaggtcctcctggccctcraggtgaagatggcccacaaggaaaa
gatggacccaagggagagcctggtgaacagggcccagctggggagcctggagagaagggg
atagaaggagaacccgggcctcaaggaccagctggaattcctgggaaacaggggttttct
ggaccagaaggaaaactgggccccccagggaatagaggacgacacggaaagaagggagaa
aagggtcctccaggtctggctggtgagattggttctcgaggagaccttggccaacaaggc
aagccggggctgaaaggtgccagaggaactcgaggctcacctggtcagccaggagccatg
gggttggaagggcaaccaggactgcttggatacccagggcatcctggtaagcctgggccc
atcggaccaccaggccctaaaggtgaaaagggttattcaggcgaggacaataagactcca
ggaccaccagggcccttaggtgaaccaggctctctaggagagcgtggagatcgtggagag
ccaggtgacgaaggataccagggtcatactggtcctaatgggcctcgtgggacaatcggc
ccacaaggactgccgggatcacctggcgarcctggagaacaaggcccaaaaggagaaaaa
ggagctccgggctctgcaggaaaaaaaggagcgcgaggtctgagcggggcccctggcact
gaaggcccaaccggtttaccaggactgaggggaccgaagggtttcccaggaccagatggt
cctccaggactgatgggtctacaaggtctaccaggaaaaccaggacggcagggtcagcga
ggtttggtgggtcaggagggacttgctgcgatgccgggtcccaggggagaaactggactt
cctggagcacctggagaaatagggccaccyggtcaaaagggagaacctggcctgccaggt
gacagaggacctgctggaatgaaaggaatggagggtgctacgggtgaccagggcaggaaa
ggtgaccctggacctaaaggacaagcaggagagtctggagatttggggatagttggtttg
caaggttttccaggaccacagggaccaaatggtgaactgggattaaggggcatccctggt
cctaaaggacctgtgggttctctgggtttcagtggacctgtaggccccgaaggaaggatt
ggtccagttgggaagcctggtcacagaggtccaaaaggaagcattggtgaaatggggcct
caaggaccacaaggaagtccaggacccaggggaccccctggtgcacccggtccaacaagg
aacatttatgatgactcagtttacrgtcaatctgactccaattctgccctcaggaccgag
atctttcagaatatggacatgagccaaccagaccaaaatacagagatactgaagacgctt
cgttacctgagcagcatcgtcgagagcatcaagaagcctctggggacaagggacaaccca
gctcgtgtctgcaaagacctgctrgactgtcgacacttacacctcaaagacgactggttc
tggattgatccaaacctgggatgtacttctgatgccttcaaggtctactgcaactttact
gcaggtggacagacttgtttgcaccctgtggcttccaataagatggtgtttggtgttgag
aaagtccaaatgaagtttcttcatttactgagctcggaggccagccaaagcatcacgttc
cactgccaaaacgatccatcctttaccgccaaagataccgtcacctccactgaacccttg
cacatagaaaacagcaagcttcggttccaaggctggaacaaacaaatgtttgagaaagac
acactacttgaacaacatttgatacaagatgagtgcaagatccaagatggcagctggcac
cagtctcgtttctccttccacactcaggacagtcgtcagctacccatttcagacatacag
ggatttcctacttcacaggacaacagtcaacaatacatagaaatcggtcctgtctgcttc
ctctga
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integrated database retrieval system
