Austrofundulus limnaeus (annual killifish): 106529234
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Entry
106529234 CDS
T06063
Symbol
col5a3
Name
(RefSeq) collagen alpha-3(V) chain
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
106529234 (col5a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
alim00536
]
106529234 (col5a3)
Glycosaminoglycan binding proteins [BR:
alim00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106529234 (col5a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
106529234
NCBI-ProteinID:
XP_013880047
UniProt:
A0A2I4CJ75
LinkDB
All DBs
Position
Unknown
AA seq
1863 aa
AA seq
DB search
MDSLIRTGLCRRIHLFLFIFLHLWTAQAADPIDVLRVLGLSENMDGVSLEAGLCTSRRGT
EEMDLAYKIKKIRLSAPTKQLYPDSKFPENFSLMTTVRATKGSQFFLLSVYDDQGVQQLG
LEVGRSPVFLYEDQHGHPTPELYPTFRKINMADGKWHRIAFSVHNKSVTLYLDCEKVETL
DLLRGDDAVVSLEGVTVFGTRLLDEEVFEGDIQQLMIVDDSQAAADYCVNYIPDCDFALP
HNSQAFGQQEHIQLESDASTQSDELAEKKDVSKKGKRDKKNKKKKDKNSRGKRKGKGKKG
SRKKKHEEEGVEEGSLRASTALPEFPSQESFPPTELPDIRSTLKTNFPTQVFDRTTVETH
KPDFATEAPTVVPSILPVPVVTKEEDTPLKKEMLVEYEDSLYGDLFEDLSVSTVTAGPNV
TEHEILEYEDSKNDTDLEYEEYEIYEDDFGFAERERVETLNVEAALRAEKGQKGEPAIIE
PGLLVIGPSGLPGPEGLPGPAGPTGPPGPRGDPGDLGPQGRPGLPGTDGIPGPPGTLLML
PFHYGGDSQKGPGVSPQEAQAQAILQQTKMSLQGPPGPLGLTGRPGPVGVPGPSGLKGDL
GEDGPPGLRGLPGPPGINGKPGKRGRAGVDGGRGAPGETGAKGDRGFDGLPGLPGDKGHI
GDRGRLGPQGPVGEPGEKGSDGPVGPRGQPGEPGPRGLVGPRGPPGSPGQAGFHGSDGVQ
GSKGNQGPSGEIGPPGQQGNPGAQGFPGPQGPIGLPGEKGPIGKQGIQGLPGVDGPPGHP
GREGPPGEKGIQGLLGIQGPVGYPGTRGVKGADGVRGLKGSKGEKGEDGFPGSKGDMGVK
GDRGDNGVPGPRGEDGPEGLKGQSGPVGDAGPAGIAGEKGKLGVPGLPGYPGRQGPKGTL
GFPGGAGMLGEKGRRGAAGQPGPGGQRGPNGXRGGRGPKGPTGKPGEKGTAGQDGPPGAL
GDRGPQGAQGGHGEPGPRGPNGPPGKDGLPGHPGQRGEPGFQGKNGPPGPPGVVGPQGKT
GETGPTGDRGHPGAPGPPGEHGLPGTAGKEGAKGDPGPSGNPGKSGPPGLKGFRGSRGTP
GAVGPPGLKGGEGQPGVAGSTGATGERGPAGPAGAIGQPGRSGSVGPAGPAGEKGEPGEK
GGVGPAGHDGEPGPAGLPGVTGSPGPPGEDGDKGEPGGPGQKGSKGDKGEGGPPGPVGIQ
GPVGQPGPSGADGDSGPRGQMGVNGAKGDEGPRGFKGPTGPSGLQGMPGPPGEKGESGHV
GLMGPPGQHGPRGPQGPVGAEGPPGLPGGIGQPGLVGEKGEDGEAGDPGMVGEPGPPGGK
GDVGEKGDSGPPGAAGPPGSRGSPGEDGPKGNLGPIGFPGDLGPPGEAGANGVDGTPGPK
GDNGELGKAGPQGASGEPGPPGPPGRRGQVGAAGKEGKQGMKGAKGAAGTPGLVGKTGPV
GPQGSPGRPGPEGLRGIPGPAGEQGLNGPPGQTGPPGPIGPPGLPGLKGDPGKKGEKGHG
GLIGLIGPPGEPGEKGDRGLPGIQGLQGTKGDEGVGGPPGPIGPPGQPGLSGPAGGKGSK
GEPGGVGAIGDPGPAGPPGPPGPPATVVQPLPVWEGRRKRRRHSDGAEEPALTREDTEDF
LQGDQPLEDAEGMEEVFATLSSMKNEVEFMRKPLGTFDSPARTCKELMMIQPNYRDGDYW
IDPNQGCHRDSIKVFCNFTAFGETCLYPDKRIETVKLAAWSKEKPGSWFSQYKKGKQFSY
ADSDGNPVHVVQLTFLKLLSATAKQRFTYTCQNSAGWFDNTSRSYRHALRLRGSNDEELT
QAKSPFITAVHDGCQLRKGQDRTVLEIDSPSAELLPIIDVAPADFGSNNQKFGFEVGQVC
FLG
NT seq
5592 nt
NT seq
+upstream
nt +downstream
nt
atggacagtttaataaggaccgggttgtgcagaagaatacatctgtttctttttatcttt
cttcacctatggacggctcaagctgctgatcctattgatgttctgcgagtgctcgggctg
tcagagaacatggacggggtgtccttggaggctggtctctgcaccagcaggaggggcacg
gaggagatggacctggcttacaagatcaaaaagatccggctcagtgctcccactaaacag
ctataccctgattctaaattccctgagaatttctccctgatgacaaccgtcagggctacg
aaaggctcccagttcttcctcctgtcggtctacgatgaccagggggtgcagcagctggga
cttgaagtggggaggtcacctgtcttcctgtatgaggaccagcatggacaccccactcca
gaactttaccccactttcaggaagatcaatatggccgatggaaagtggcacagaatagcc
tttagcgtgcacaacaagtccgtgaccctttatttggattgtgagaaagtcgagaccctg
gatctgctgcgaggggacgatgctgtggtcagcttagagggggtcaccgtgtttggaacg
cgcctgctggatgaagaagtttttgagggagatattcagcagctgatgattgtggatgac
tcacaggctgctgccgactactgtgtcaactacataccagactgtgatttcgctttgcca
cacaacagtcaagcttttggccagcaggagcacatccagcttgagtctgatgcctcgacg
caaagtgatgaactggccgaaaaaaaggacgtctccaaaaagggcaagcgagacaaaaag
aacaaaaagaagaaggacaaaaactctcgaggaaaacgcaaaggcaagggcaagaagggg
tccagaaagaaaaagcacgaagaggagggcgttgaggaaggctccctccgagcgtctaca
gctctgccagagtttccgtcacaggaatccttcccgcctacagagctcccagatattagg
agcaccctaaaaactaatttccccactcaagtttttgacaggaccactgtggagacgcat
aaacctgacttcgcgactgaggcccccactgtggtgcccagcatactgcctgtgcccgtg
gttaccaaggaggaggacacgccgctgaagaaggaaatgttggtggagtatgaagacagc
ctttacggagacctgtttgaagacctctcagtttccacagttaccgcgggcccaaatgtt
accgaacacgagattctygaatatgaagattccaagaatgacacggacttggagtatgaa
gagtatgaaatttacgaggacgactttggctttgcagaacgggaacgagtggagacgctg
aatgtcgaggctgcactcagagcagaaaagggccaaaagggagagccggctattatcgaa
ccgggtcttttggtgataggaccctcaggtctcccaggaccggaggggctccccggacca
gcaggaccaacaggtcctccgggacccagaggtgatccaggtgatctgggcccccaagga
cgccctggtcttcctgggactgatggaatcccaggtcctccaggaaccctgctgatgcta
ccatttcattatggaggagattcacagaagggaccaggrgtgtccccacaggaggcacaa
gcacaagctatcctgcaacagaccaagatgtcacttcaggggcctccagggccattgggt
ctcacaggacgaccaggcccggtgggtgttccaggtccatctgggcttaaaggtgacctt
ggagaagacggccccccgggacttcgtggtttgccaggccccccagggattaatggaaag
ccaggcaagaggggacgtgcgggtgtggatggaggtcggggagctccaggtgaaacaggt
gcaaagggtgacagaggctttgacggtctgccaggtctcccaggagacaaaggacacata
ggggacagaggaaggcttggtcctcaaggacccgttggagagccaggagagaagggatct
gatggacctgtgggaccaagaggacaaccaggtgaacctggtccccgaggtctagtcggg
ccgagggggccacccgggtcacctggacaagcggggtttcatggaagtgacggagttcaa
gggtcaaagggcaatcagggtccatctggtgaaataggacccccaggtcaacaaggaaat
cctggagcacagggctttcctggtcctcagggtcccattggactgccaggagagaagggt
cccataggtaaacaaggcatacaaggattaccaggtgttgacggtcctccyggtcaccca
ggaagagagggccccccaggagaaaaaggcatccaaggtttacttggyatccagggtcca
gttgggtatccaggtactcgtggagtcaagggagcagatggagtccgaggactgaagggg
agcaaaggagaaaaaggagaagatggcttcccagggtctaagggtgacatgggtgtcaaa
ggagacaggggtgataatggagttcctggtccacgtggagaggatggtccagaagggcta
aagggtcaatcaggacctgtgggagatgcaggaccagctggaatagcaggcgaaaagggt
aaacttggcgtgcctggtttgcctggttacccaggaagacaaggtcctaagggaacactt
ggcttccccggtggagccggcatgctgggagagaaagggagaaggggcgcagctggtcag
ccaggtccagggggtcaacgaggtcctaatggarccagagggggaagaggaccaaagggg
ccaactggaaagcctggagaaaagggtactgctggacaagatggtcctccaggagctcta
ggagaccggggtcctcaaggagcacaaggggggcatggtgaaccaggacctagaggacct
aatggtccacctggaaaggatggattaccaggccatccgggtcagagaggagaaccaggc
ttccaaggaaagaacggacctcctggccccccaggagttgttggaccacaggggaaaact
ggtgagacaggcccaactggagatagaggtcatccaggtgcaccgggaccaccaggtgag
catggtttacctggaactgctggaaaagagggtgccaagggagatccaggtccatcagga
aacccaggaaagagtggacctcctgggcttaaaggcttcagagggagcagagggacccct
ggtgcagtgggtcctccaggtctaaagggaggagaaggccaacctggtgttgcaggatct
actggtgccacaggagagaggggtcccgctgggccggctggcgctattggccagccagga
cggtcgggcagcgtcggtcctgctgggcctgctggagagaaaggcgagccaggagagaag
ggtggcgtggggccagctgggcatgatggggaaccaggacctgcaggacttcctggggtt
acaggatcacccgggcctcccggggaggacggagacaagggggaaccaggaggaccgggt
cagaaaggcagcaaaggagacaaaggggaagggggaccaccaggacctgttggcattcaa
gggcctgtgggccaaccaggaccatctggggcagatggtgactcaggtcctcgtggacaa
atgggtgtgaatggggcaaaaggtgatgaaggaccccggggatttaagggaccaactggt
ccctctggactacaggggatgcccggaccaccaggagagaaaggagaaagcggtcatgtt
ggtttaatgggacctccaggacagcatggcccacgaggccctcagggtcccgttggtgca
gagggcccacctggtttgcctggtggaattggccagcctggacttgttggagagaagggt
gaggacggagaagcaggagaccctggaatggttggagagcctggcccccccggtggtaaa
ggtgatgtaggggagaagggcgactctggcccccctggagcagctggacctcctgggagc
agaggttctccaggggaagatggacccaagggcaaccttggtcccattggatttcctggt
gatttaggccctcctggagaagcaggtgccaatggagttgatggcacaccaggacctaaa
ggagacaatggtgaacttgggaaagcaggaccacaaggagcctctggagagcctggtcct
ccaggacctcctggtcgaaggggtcaagttggtgctgcaggaaaagaagggaaacaaggc
atgaaaggagccaaaggggctgcaggaaccccaggtttagtgggaaaaacaggcccagta
ggacctcaagggtcaccaggacggcctggcccagaaggcctccgaggcattcctggtcct
gcgggtgaacaagggttaaacggaccaccaggacaaactgggccaccaggaccaatagga
ccaccaggacttccaggactaaaaggagaccctggtaaaaagggagaaaagggtcatgga
ggcttgattggtttaattggccccccaggggagcctggtgagaaaggagaccgaggtttg
ccaggaatccaaggtttacaaggaacaaaaggagatgagggtgtgggcggtccacctggt
cccatcggcccaccaggtcaacctgggctgtctgggccagctggcgggaaaggatcgaag
ggagagccgggtggagtcggtgccataggcgatccaggccctgctggtcctccaggaccc
cctgggccgcccgcaacagtggttcagcccctgccagtttgggagggaaggcggaagaga
cgaaggcactcagacggagcagaagaacccgctctgaccagggaggacacagaggacttt
cttcaaggagaccaaccgctggaggacgctgagggaatggaggaagtctttgccactctc
tcgtctatgaaaaatgaagtggagttcatgaggaagcctcttggaacattcgacagcccg
gcccgaacctgcaaagaattgatgatgattcagcctaactacagagacggggactactgg
atagatcctaaccagggctgccacagagactccattaaagtcttctgtaacttcacggcc
tttggagagacctgtctctaccctgacaaaaggatcgaaacagtgaaattagcagcatgg
agcaaagagaaaccaggaagctggtttagccaatacaagaagggcaaacagttctcttac
gccgacagtgatgggaaccctgtgcatgtagtccagctgaccttcctgaagctcctaagt
gccacagccaagcagcgcttcacttatacctgtcagaattcagcaggctggttcgacaac
acctcccgctcctaccgccacgccctccgcctccgtggcagcaacgacgaggagctcacc
caagccaaaagccccttcatcacagcggtccatgatggatgccagctccgcaaaggtcag
gacaggacagttttagagattgattccccgtcagcggagctcctcccgattatagatgtg
gctccagcagactttggcagcaacaaccagaagtttggattcgaagttggacaagtgtgc
ttcctcggttaa
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