Austrofundulus limnaeus (annual killifish): 106533871
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Entry
106533871 CDS
T06063
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
KO
K08131
collagen type IX alpha
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim04510
Focal adhesion
alim04512
ECM-receptor interaction
alim04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106533871
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
106533871
09142 Cell motility
04820 Cytoskeleton in muscle cells
106533871
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
alim00535
]
106533871
Proteoglycans [BR:
alim00535
]
Extracellular matrix (ECM) proteoglycans
Others
106533871
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
106533871
NCBI-ProteinID:
XP_013885781
UniProt:
A0A2I4D0K9
LinkDB
All DBs
Position
Unknown
AA seq
662 aa
AA seq
DB search
MGTSCVKQVFVLSGLLVFVLCVISSLCQEEYSGYHSGEKHVYEESSAVDHDNIGTTEYQP
EPTHYDENQRAVDEDYDPTRVTMITEDTFPFETVTESHYAKEDTETMQVPFKFPAGPETE
SSEESGGDAALGEEGPTECDCEPGEPGFAGFAGPKGSRGLQGQTGLPGIQGREGYKGTKG
VQGRRGDPGPVGDVGAEGEDGASGFSGGMGDSGLQGEPGEHGEIGVKGDVGMEGPRGGVG
APGETGPRGDPGPAGSNGGKGIKGSRGDQGKQGLQGKDGPKGQTGAPGFPGDVGERGYSG
YPGQPGAVGPSGPKGAKGLGGFPGSDGEPGEDGPIGVPGLAGEPGLFGVKGSKGDRGIRG
PRGRVGRAGAQGGPGDAGVPGKPGPKGLQGPIGSKGETGPDGEKGAAGRKGVKGERGQKG
DKADRGDKGQRGPKGAVGRPGTPGPVGPPGIPGARGDRGPIGDPGGKGRAGPKGVQGPSG
PGLTDEQVLQLCKDVVKAQLSQYAPSIQAKCAQGCPINDRTLIGPPGVPGPPGPPGKAGK
AGKAGEKGSRGAQGDRGTEGQKGAQGERGQKGPKGITGDPGKGLPGSDGPQGLRGLPGPP
AEPKNGMEGSRGPRGFPGLVGPPGMLGLPGVPGFCEARDCSIHAPVLRKEQGLVKGPVSS
NV
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgggaacttcctgtgtcaagcaggttttcgtcctctcggggctccttgtgtttgtgctg
tgcgtcatctcctctctctgccaggaggaatattccggataccactcaggtgagaaacat
gtttatgaagagtcgtctgcagtcgaccacgataacataggtacaactgagtatcagcct
gagccgactcattatgatgaaaaccagcgagcagtggacgaggactatgaccccaccaga
gtaaccatgatcacagaggacacctttccctttgagaccgtcactgagtcccactacgcc
aaggaagacactgagaccatgcaggtcccatttaagttcccagcaggaccagaaacggag
tcctcagaggagtctggaggtgatgctgcacttggagaagaaggaccaacagagtgcgac
tgtgaaccaggagagcctggttttgctggttttgcaggaccaaagggatccagaggtctg
cagggtcaaactggtctgccggggattcaaggcagagagggttataaaggaaccaaagga
gttcagggaagaagaggagatcctggaccagtgggagatgttggagccgaaggagaagac
ggagcttctggtttctctggagggatgggagattctggactacaaggagaaccaggcgag
catggagaaattggtgtaaagggtgacgtcggtatggagggccctcgcggaggagtcgga
gctcccggtgagactgggcctcgtggtgacccaggccctgcaggatcaaacgggggtaaa
ggtatcaaggggtctcgtggggaccaaggcaagcagggtcttcaaggaaaggatgggcca
aagggtcaaactggagcaccgggatttccaggagacgttggtgaaagaggctactctggt
tatccaggacaaccaggagctgttggacccagtggaccaaagggcgctaaaggtctagga
ggctttccaggcagcgatggtgaacctggagaagatggtcccataggagtcccggggctg
gcaggagagcctggactatttggtgttaaggggagtaaaggtgaccgtggcatcagagga
cctcgaggcagagtgggcagagcgggagctcaaggaggacctggagatgctggcgtccct
ggaaaaccaggaccaaagggcctccagggtcctatagggtccaaaggtgaaacaggacca
gatggggaaaagggtgcagcagggagaaagggcgttaagggagagagaggacaaaaggga
gacaaagctgatcgtggcgataaaggacagagagggccaaaaggcgcagtgggtcgaccc
ggcactccaggccccgtaggaccacccggcatcccaggggccagaggtgaccgaggtcca
atcggtgatccaggtggtaaaggtcgagcaggacctaaaggagtccaaggtccatctggt
cctggtctgacagatgagcaggtcttgcagctctgtaaggatgtggtcaaggcccagctc
tcccagtacgccccctccatccaagccaagtgcgctcagggatgtcccatcaacgaccgg
actctaattggacctccgggagtcccgggaccaccaggaccacctggcaaagctggtaaa
gcaggaaaagctggagaaaaaggatcaagaggtgctcaaggtgacagagggacagaagga
cagaaaggagctcagggtgaacgaggtcagaagggacctaaaggcatcaccggtgatccg
ggcaaaggcctgccaggatccgacggaccacagggactcagaggtcttcccggtccccca
gcagagcctaaaaacgggatggagggttctcgcgggcctcggggcttccctggcctggtg
ggtccgcccggcatgctggggctcccaggagtgccggggttctgcgaggcccgagactgc
agcattcacgctccggtgctgcgcaaagagcagggcctggtgaaaggacccgtcagttca
aatgtctaa
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