Austrofundulus limnaeus (annual killifish): 106533880
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Entry
106533880 CDS
T06063
Name
(RefSeq) voltage-dependent L-type calcium channel subunit alpha-1F-like
KO
K04853
voltage-dependent calcium channel L type alpha-1F
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim04010
MAPK signaling pathway
alim04020
Calcium signaling pathway
alim04260
Cardiac muscle contraction
alim04261
Adrenergic signaling in cardiomyocytes
alim04270
Vascular smooth muscle contraction
alim04912
GnRH signaling pathway
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
106533880
04020 Calcium signaling pathway
106533880
09150 Organismal Systems
09152 Endocrine system
04912 GnRH signaling pathway
106533880
09153 Circulatory system
04260 Cardiac muscle contraction
106533880
04261 Adrenergic signaling in cardiomyocytes
106533880
04270 Vascular smooth muscle contraction
106533880
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
alim04040
]
106533880
Ion channels [BR:
alim04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
106533880
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
GPHH
PKD_channel
Ca_chan_IQ
Motif
Other DBs
NCBI-GeneID:
106533880
NCBI-ProteinID:
XP_013885793
UniProt:
A0A2I4D0P4
LinkDB
All DBs
Position
Unknown
AA seq
1469 aa
AA seq
DB search
MTRTDTIHSTTSSTGTQRRRGQHAKKQVQGSNQVQRAPRALFCLKLNNPIRRAALHIVEW
KPFDIFILLAIFANCVALGVSKPFPEDDSNSTNHDLEQVEYIFLIIFTVETFLKILAYGL
VMHPSSYIRNGWNLLDFVIVIVGLFSVVLETMTHKTDGEHATTHHMPGKPGGLDVKALRA
FRVLRPLRLVSGVPSLQIVLNSIMKAMVPLLHIALLVLFVIIIYAIIGLELFIGRMHRTC
YYIGTDNYVEDEPVPCAFAGHGRQCIVNGSECRGKWAGPNGGITNFDNFFFAMLTVFQCI
TMEGWTDVLYWMNDAIGFELPWVYFVSLVIFGSFFVLNLVLGVLSGEFSKEREKAKARGD
FQKLREKQQMEEDLCGYMDWITQAEDMDDLDEDGNPRPSLGDLSDKKKKFGWFSHSNETH
ASLPASETGSENTENIDEDHSNCCQACCAQVMKVGCCRTLRRWNRVCRRNCRTAVKSVLF
YWLVLLLVFLNTSLSASEHYNQPEWLTQVQDIANKVLLSLFTVEMLLKMYSLGLAHYFVA
FFNRFDCFVVCAGIMETILVEMDIMPPLGIAVLRCVRLLRIFKVTRHWTALSNLVASLLN
SMKSIASLLLLLFLFLIIFALLGMQLFGGKFNFDETQTKRSTFDAFPQALLTCFQILTGE
DWNVVMYDGIMAYGGPVFPGMIVCVYFVILFICGNYILLNVFLAIAVDNLAGGDKEDKKK
EKKKEGAEEEEEEAEGDVKVDIDEDTEYEEDEGPEGDDDGGVQLKMADLAPPKEKVVPIP
EGSAFFCLSKTNPIRKACHALIHHHIFTNLILLFIILSSCSLAAEDPIRAHSFRNNILGY
ADYAFTSIFTVEILLKMTVHGAFLHQGSFCRNWFNLLDLLVVSVSLVSFFLHSSAISVVK
ILRVLRVLRPLRAINRAKGLKHVVQCVFVAIRTIGNIMIVTTLLQFMFACIGVQLFKGKF
YRCTDEAKSTPEQCKGTFVVYKDGDVTHPMVRERIWLNSDFNFDNVLMGMMALFTVSTFE
GWPALLYKAIDANGENSGPIYNYRVEISIFFIVYIIIIAFFMMNIFVGFVIITFREQGEQ
EYKNCELDKNQRQCVEYALKAQPLKLYIPKNPVQYKFWYIINSTGFEYVMFVLILLNTVT
LAVQHYEQSKTFSDIMDILNMVFTGLFTVEMLLKLLALRLRHYFVDAWNSFDALIVVGSV
VEIVVTEFSSGEDSSRVSITFFRLFRVMRLVKLLNKGEGIRTLLWTFIKSLQALPYVALL
IAMIFFIYAVIGMQTFGKIAMQDNTQINRNNNFQTFPQAVLLLFRCATGEAWQEIMLASL
PGKRCDPESDYEPGEEFSCGSNFAIVYFISFFMLCAFLIINLFVAVIMDNFDYLTRDWSI
LGPHHLDEFKRIWSEYDPEAKGRIKHLDVVALLRRIQPPLGFGKLCPHRVACKRLVAMNM
PLNSDGMVTFNATLFALVRTALKIKTEGL
NT seq
4410 nt
NT seq
+upstream
nt +downstream
nt
atgacgagaactgacactattcactccactacaagttcaacaggaacacagagacgaaga
ggacaacacgctaagaaacaagtgcagggcagtaaccaggtccagcgagccccacgagca
ttgttctgcttaaaactcaacaatccaatcagacgagctgcccttcatatcgtcgagtgg
aaaccgtttgatatcttcatccttttagccatctttgctaactgtgtcgctctgggagtt
tccaaaccatttcctgaagatgactccaactccactaaccacgacctggaacaagtagag
tacatcttcctcatcatcttcaccgtggagaccttcctgaagattctggcctacggtctg
gtgatgcaccccagctcctacatccggaacggctggaacctgctggactttgtcattgtt
attgttgggttgttcagcgtggtcctggagacgatgactcataagacggacggcgagcay
gcgaccacccatcacatgccagggaaaccaggaggtcttgatgtcaaagctctcagagcc
ttcagagtgttgcgacccctcagattggtttctggagtccccagtctgcagatcgtactg
aactccatcatgaaggccatggttcctctgctccacattgccctgctggtcctcttcgtc
atcatcatctacgccatcatcggcctggagctcttcatcggacgcatgcaccgcacctgc
tactacatcggaacagataattacgtcgaggatgaaccggtaccatgtgcgtttgccggt
cacggccgtcagtgcattgtgaacggttctgagtgtcgggggaagtgggccggtcccaat
ggtggaatcaccaactttgacaacttcttcttcgccatgttgacggtgttccagtgcatc
accatggagggctggaccgatgtgctgtactggatgaacgatgccatcggctttgagctg
ccgtgggtttattttgtcagtctggtgatttttggctctttctttgtcctgaacctggtc
ttgggagtcctgagcggagagttcagtaaggagagggagaaggccaaggctcgaggagac
ttccagaagctgcgggagaagcagcagatggaggaggatctgtgtggatacatggactgg
attactcaggccgaggacatggacgacctggacgaggacggaaacccacgtccatctctg
ggcgatctgtctgataagaagaagaagtttggatggttcagtcactccaacgaaacccac
gcgagtcttccagccagtgagacaggttctgaaaacacagagaacatcgatgaagaccac
tccaactgctgccaggcctgctgcgctcaggtgatgaaggtgggctgctgccggacgctg
cggcgctggaaccgagtgtgtcgcagaaactgccgcactgcggtcaaatcggtgctgttc
tactggctggttctgctgctggtcttcctcaacacctccctcagtgcctctgagcactac
aaccaacctgagtggctgactcaagtccaggacatcgccaacaaggtgctgctgtccctg
ttcacggtggagatgctgctgaagatgtacagtctgggtctggctcattacttcgtggcg
ttctttaaccgcttcgactgcttcgtggtgtgcgccggcatcatggagaccatcctggtg
gagatggacatcatgcctcctctgggcatcgccgtcctgcgctgcgttcgcctgctgcgt
atcttcaaggtcacacgccattggacggccctgtccaacctggtggcatccctgctgaac
tccatgaagtccatcgcctcgctcctgctcctcctcttcctrttcctcatcatcttcgct
ctgctgggcatgcagctgtttggagggaagttcaacttcgacgagacgcagacgaaacga
agcaccttcgacgccttcccgcaggcgctgctcacctgcttccagatcctgacaggtgag
gactggaacgtggtcatgtatgacggcatcatggcgtacggcggtcccgtgtttcctggg
atgattgtctgcgtttactttgtcatcctcttcatctgtggcaactacatcctgctgaac
gtcttcttggccatcgctgtggacaatttggctggaggagacaaagaggacaagaagaaa
gagaagaagaaggagggagctgaggaggaggaggaggaggctgaaggagacgtgaaggtg
gacatcgatgaagacacagagtatgaggaagacgagggtcctgagggggatgatgatgga
ggagtccagctgaagatggcagatctcgctcctcctaaagagaaggttgttcccatccca
gaaggcagtgcgttcttctgcctcagcaaaaccaacccaattcgaaaggcgtgccacgct
ctgatccaccaccacatcttcaccaacctcatcctcctcttcatcatcctcagcagttgc
tcattggctgccgaggatccaatcagagcgcactccttcagaaacaacattctgggttac
gcagattacgccttcacctccatcttcactgttgagattctgctgaagatgacagtccat
ggagcgttcctccaccagggctccttctgcagaaactggttcaacctgctggacctgctg
gtggtcagcgtctctctggtctccttctttctgcactccagtgccatctctgtggtgaag
atccttcgagttctcagagttctacgacctctgagagccatcaacagagccaaaggactt
aagcacgtcgtccaatgtgtgtttgtggccatcagaactatcggaaacattatgatcgtc
acaactttgctgcagttcatgtttgcctgcatcggagtccagcttttcaagggtaaattt
taccgctgcacagatgaggccaagagcactcctgaacagtgcaaagggaccttcgtggtc
tacaaagatggagacgtgactcatccgatggtcagagagcggatctggctgaatagtgac
tttaactttgataacgtgttaatggggatgatggcgctcttcaccgtgtccaccttcgag
ggctggcctgcgttgttgtacaaagctatagatgcaaacggagagaactctggtcccatc
tacaactaccgagtggagatttccatcttcttcatcgtctacatcatcatcattgccttc
ttcatgatgaacatctttgtaggcttcgtcatcatcaccttcagagagcaaggagagcag
gagtacaagaactgtgagctggacaaaaaccagcgtcagtgtgtggagtacgccctgaag
gcccagcctctcaaactttacatcccaaagaacccggttcagtataagttctggtacatc
atcaactctacaggatttgagtacgtgatgtttgtcctgatcctgctcaacacagttacc
ctggcggttcagcactatgagcagtccaaaaccttcagcgacatcatggacatcctcaac
atggtcttcactggacttttcactgtggagatgctgctgaagctgctggctctcagactt
cggcactacttcgttgatgcctggaattcttttgatgctctcatcgtggttggcagcgtg
gtggaratcgtggtcactgagttcagtagcggcgaggacagctcccgtgtgtccatcacc
ttcttccgcctgtttcgagtgatgcgattggtcaaactgctgaacaaaggggaggggata
cgtacgctgctgtggacattcatcaaatcactgcaggccctgccatatgtcgctctgctc
attgccatgatcttcttcatctacgccgtcattggcatgcagacatttgggaagatagcg
atgcaggacaacactcaaatcaacagaaacaacaacttccagacatttcctcaggctgtt
ctcctcctcttcaggtgtgccacaggtgaggcttggcaggagatcatgttagccagtctt
ccaggtaaacggtgcgaccctgagtcagactacgaaccaggagaggagttcagctgcggc
agcaactttgccattgtttacttcatcagtttcttcatgttgtgcgctttcctgatcatc
aatctttttgttgccgtcatcatggacaacttcgactacctgacacgtgattggtcgatt
ctggggccacatcacctggatgagttcaaaaggatctggtccgagtacgatccagaggcc
aaaggtcggatcaaacatttggatgtagtggctctcctccgcaggatccagcctcctcta
gggtttgggaagttgtgtcctcacagagtcgcctgtaagcggctggtggccatgaacatg
cctctgaactctgacgggatggtgacctttaacgctacgctcttcgccctggttcgcacc
gcactcaaaataaagacagaaggtctgtga
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integrated database retrieval system
