Austrofundulus limnaeus (annual killifish): 106536151
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Entry
106536151 CDS
T06063
Name
(RefSeq) collagen alpha-1(XVII) chain-like
KO
K07603
collagen type XVII alpha
Organism
alim
Austrofundulus limnaeus (annual killifish)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
106536151
NCBI-ProteinID:
XP_013888804
UniProt:
A0A2I4D987
LinkDB
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Position
Unknown
AA seq
2003 aa
AA seq
DB search
MDELTRQMEISGERVVTESVTSSTRLTSLPPKGTGGSNQRMMSSGAGGPGLEKNVLTQSS
GGTYFSSSSVGVTSSYSSSSGIYLGGDSSGGGEGGGSYIDGESFGRGGGGGGSSYVVSSV
SKVRSSSSGGARRAQTAVSAGGLSPAFRERKTISSRSGGYDGSSSANSSPEFTRKDYGNY
CSSTSRGRSESRESEIRARLQSASPSAGRWAELEDVKKLLKGRSSSVSPTRSSSASITLP
VPKKSSVETKTVSVATQSVSSSFGSGLRTAGFDTIDVAGLYDTGMTSRQRDTGVQTGRYD
VTVKSSHYDTGTKSSQYDVSLGSGQYDVGLKSAQYDMSLKSGQYDTGLRSGQYDSVRSGQ
YDSVRSGQYDSVRSGQYDTLDAPFPTFSWSTTTLPSSSAAPVVXGNTSSSYTYQVSQTGT
NNMPGGSPPLSPVSPPSLSVYGFQNNLAPTSSGVLTTSGANVSANAGGYGVQKNVSNGGG
VISSGASTATRFQTDDAYRRDYKYVASEKENVPARRDGEMLILAKDSGKQFTTTTTGSSG
VHVGGGSLSGDSIKKEKLISSYVDTAPLKADTGNSYYGSSGVLMKDKATYAEIRRDSGVF
GGGGFCCCSDACCSWWKWLLGLLLLGLLLLGLLFGLIALAEDVRKLKSRVATLESEASVA
AARTSRLSGFTNDINSHVSGGSGGVGGGGGTGTDTVFMGGGGSDSKTKIDITLVGGGTTG
GNDIDRGTLVIGGVAGAGAGTGGGAGSAGAGANAGAGANAGAGVSTGAAAAGGGGTSLSG
SAGGASSSSSAVGTGTSIGGGTSLGTRVSGRYIDDAVLLMAIKQMLRSEVQSQEFRAVLA
TSVQAERGLPGPKGDSGFPGNPGVPGPMGHPGPEGPKGQKGSQGEHGQEGATGVRGREGP
PGPRGDPGPPGFGLKGARGDPGPSGPVGLAGEPGQKGAQGVPGSAGPPGQPGPQGFRGES
GLPGAKGDRGLAGFQGLKGDVGLPGQPGIPGEKGAKGAMGFSGQEGAKGSRGDQGPSGPP
GLRGPVGPPGEAGLPGTIGLQGPPGIPGNPGQPGVKGEPGVPGRIINAAGSTSVGIPGPP
GPAGPPGPAGPPGLSGPIGPAGLPGSPGPKGDRGYKGDQGEPGIAVRTSQSISSSTAERQ
HSSSAHSELRGPPGPPGPPGRPGDSRQGPPGPPGPPGQPGYGSLGPKGEKGDAGFSSSSG
TFYTGPPGPPGLPGSKGSTGSPGPRGYPGDPGSPGVPGTPGRPGFAEGGNVIAGPPGPPG
PPGRPGLPGVKGKPGILLKAAQSFIDCNPVVLLVQRVSMVKLDPQDQKVTEELQGCQEPK
GIKEKEDHVDQQVCEPGTSGPQGPSGPMGSKGSAGETGSMGPPGARGPPGLPGDIGPPGS
PGQQGPPGLAGNPGQPGSKGEPGSPGKVIGPITSDTVAIPGPPGPSGPPGPAGLPGLSGP
IGPAGVPGQPGPKGDSGEKGDKGEQGQRGEPGAGPAGPPGPPGPPGQAGPQGPPGEGKQG
PPGRRGPPGEPGVGDPGPPGKKGEPGSFVPTSETFFAGPPGPPGPQGPPGDEGPQGYQGE
PGQPGLPGEPGVGFPGPPGPEGPQGPKGDPGIQGAEPGSSYIPGPPGPPGPPGPPGTEPG
NVGQYIADYLQSEGIRQYLAGPPGPPGPPGEPGSSGPSEDGLVDDVASRVIAYIQSSGSG
APGPPGPPGPVSVNDIINVLQREDVRAYITGPPGPPGPPGGPGFGGYPFNTQDLAERVYS
LMNERGVSGPPGPPGPPGPPGNLLATGFQSLVGPPGPPGAPGTPGPQGPPGPPGTPGFGS
YVSSDIRDYLQSVSFRGPPGPPGPEGPPGPIGQMVSFTDPIAGEKLKAEREEYVRTEDGL
SRAMFGLPGQPGPPGPPGHKGEPGVPGDTPXYSILAGKVTDYIKAHGLLEDIVQGPPGPP
GPPGPSGNSXWSSSHGNSTELIELIKNHGAIVGPPGRPGLKGEAGHPGPKGPKGERGLPG
AQGPKGDRGEFSVTAKRRRSAGF
NT seq
6012 nt
NT seq
+upstream
nt +downstream
nt
atggacgagttaacgaggcagatggagatctcaggagagagggttgtgacagaatctgtg
acctcctcaaccagactgacgtctctccctccaaagggaaccggcggatccaatcagcgg
atgatgtccagcggtgccggagggccgggcttggagaagaatgttttaacgcagagcagc
ggtgggacctacttctcttcatcctctgtcggtgtgaccagcagctacagctcctcctcg
ggaatctacctcgggggagactcctcyggtggaggggagggaggagggagctacatagat
ggagagagctttggaagaggaggaggaggaggcgggagcagctatgtggtgagctctgtg
tcaaaggtcaggtccagctcgtcgggcggtgccaggagagcgcagactgctgtctcagca
ggaggcctgtcgccggccttcagggaacggaagaccatatccagccgctcggggggctac
gacgggagttccagcgccaactcctctccagaattcacacgcaaagattatggaaactac
tgctccagcacctcaagagggaggagtgaaagtagagagagcgagatcagagccagatta
caaagtgcctccccctctgccggaagatgggcagagctggaagacgtgaagaagctgctg
aagggccgctccagcagcgtcagccctactcgctcctccagcgcctccatcaccctgccc
gtcccgaaaaagtccagcgtggagaccaagaccgtctcagtagccactcagtcagtgtcg
tcttcatttggctccggtttgagaacggctgggtttgacaccattgatgtagctggcctc
tatgatactgggatgacatctcggcagcgggatactggagtccaaacgggccgttatgat
gtcacggtcaaatcaagccattatgatactggcaccaaatcgagccagtatgatgttagc
ctgggttcaggccaatatgatgttggtttgaagtcagcacaatatgatatgagtctgaaa
tcaggccaatatgatactggtttgaggtcaggtcagtacgacagtgtgaggtcaggtcag
tacgacagtgtgaggtcaggtcagtacgacagtgtgaggtcaggtcagtacgacacgctg
gacgccccatttcccactttctcctggtccaccacaacactaccatcctcctccgccgct
ccagttgtcyctggcaacaccagcagcagctacacctaccaggtcagccagaccggcacc
aacaacatgccaggggggtccccaccactcagccctgtctcacccccatccctgtcagtt
tatggctttcaaaataatctggcacccacctccagcggtgttcttaccaccagtggcgcc
aatgtctctgcaaatgccggaggatatggtgttcagaagaacgtgtcaaacggcggaggt
gtcatcagctctggggcctctacagctacaagattccaaactgacgatgcctacaggagg
gactataagtacgtggcttctgagaaggagaacgttcctgccaggagagatggagagatg
ctcattttggccaaagacagtgggaagcagttcaccaccaccaccaccggcagcagcggc
gttcatgttggaggaggttcgctgtcaggagattccatcaagaaggagaaacttatttcc
agctacgttgacacggccccactgaaagcagacacggggaactcttactacggatcgtct
ggagttttaatgaaagacaaagcaacgtatgcagagatccgcagagacagcggcgtcttc
ggaggcggaggcttctgctgctgctccgacgcgtgctgctcctggtggaagtggctgctg
ggcttgctcctcctcggcctcctcctgctgggactcttgtttggcctcatcgcactggct
gaggatgtgaggaagctgaagagccgagtggcgacattggaatccgaggcctcggttgct
gctgctcgcactagtcgactgtcaggtttcaccaatgacatcaactcccacgtaagcggc
ggcagtggcggcgttggcggtggcggaggtaccggtactgacacggtcttcatgggaggc
ggaggctcggattccaaaacaaaaattgacatcactcttgttggcggcggcaccaccggt
ggcaacgacattgacaggggcactttagtcatcggtggggttgcaggagccggagccgga
accggtggcggtgccggcagtgctggtgccggtgctaacgctggtgctggtgccaatgct
ggtgctggtgttagtactggtgctgctgctgctggtggtggtggtaccagtttgagtggc
agtgctggtggcgccagttcaagcagtagtgctgttggtaccggtaccagtatcggtggt
ggcaccagcctcggtaccagagtgagtggaagatacatcgatgatgctgttcttctgatg
gccataaagcaaatgttgcgatctgaggtgcagtcccaggaattcagagctgttcttgca
acctcagttcaggcagagagaggattgcctggacctaaaggtgattctggttttcctgga
aatccaggtgtaccaggtccaatgggacatcctggccctgagggtccaaaaggacagaaa
ggaagccaaggtgaacacggacaggagggggcaacgggtgtcaggggtcgtgagggtcca
cctgggcccagaggcgatccgggacctccaggttttggactgaaaggtgctcgcggagat
cctggaccttctggacctgtgggacttgctggggagcctggacaaaaaggcgctcaggga
gttcctggatcagccggaccaccaggtcagccaggtcctcagggtttccgtggcgagtct
gggctacctggggctaaaggggacaggggtcttgctggatttcaaggactcaaaggtgac
gttggtttaccaggtcagccaggtataccaggagagaaaggcgccaaaggagctatggga
ttttctggacaagaaggagcaaaaggatcgagaggtgaccaaggaccttctgggcctcca
ggactcagaggtcctgttggacctcctggagaggctggacttccaggaaccattgggctt
caaggaccaccaggaataccagggaatccaggccaacctggggtcaaaggtgaacccggt
gtaccagggagaatcatcaatgcagctggctccacctctgttggcatcccagggccgcct
gggcctgctggtccccctgggcctgctggacctccaggattatcaggtcccattggccct
gctggtcttcctggctcacctggtcctaaaggagacagaggatacaagggagaccaagga
gaacctggaatagcagtcaggaccagtcaaagtatatcctcctctacagcagagagacag
cacagctccagtgcacactcagaactgcgtggcccaccgggtccacctgggcctcctgga
cgtccaggcgattcaagacagggccccccaggaccacctgggcctccaggccagccaggt
tatggaagtcttggacctaaaggagaaaagggagacgcaggtttttcgtccagctctgga
acattttatactggaccaccaggacctcctgggcttcctgggtctaaaggatcaacaggt
tctcctggaccacgtggatacccaggtgacccaggctcaccaggtgtgcctgggactcca
ggaagaccgggattcgctgagggaggaaatgtgatcgctggaccaccaggtccaccagga
cctcctggacgaccaggactacctggagtcaaaggtaaacccggcatcctgctgaaagca
gctcagagttttattgactgcaatccagttgtgctcctggtccaaagggtttcaatggtg
aagctggaccctcaggaccaaaaggtgaccgaggagctccaggggtgccaggaaccaaag
gggatcaaggagaaagaggaccacgtggaccagcaggtctgtgaacctggaacatctgga
ccacaaggcccatcaggaccaatggggtcaaaaggaagtgcaggtgaaacgggctccatg
ggacctcctggtgctagaggaccaccaggacttcctggtgatattggtcctccaggttct
ccmgggcagcagggacctccaggactcgcaggaaacccaggacagcctggcagcaaaggt
gaaccaggatcacctgggaaagtcatcggtccaattacttctgatactgtggccatccct
ggacctccaggaccatctgggcctccgggtcctgcaggacttcctggtttatctggtccc
attggtcctgctggwgttccaggacaaccaggtccaaaaggagattctggggagaaagga
gataaaggagagcaaggtcaacgtggtgaaccaggagccggacctgcaggtccaccagga
ccaccaggtcctccaggacaagctggtcctcagggtcctcctggtgaaggtaaacaaggt
cctccaggccgtagaggaccacctggagagccaggtgttggtgaccctggacctccaggg
aagaagggagagccrggcagctttgtgcccacatcagaaaccttctttgccggaccacca
ggacctccaggcccacagggtccaccaggtgacgaaggacctcaaggctaccaaggagag
ccgggacagcctggtcttccaggagaaccaggagttggtttccctggacctcctggtcca
gagggaccacaaggacctaaaggagatcctggaatccagggagctgagcctggtagctca
tatattccaggcccacctggtccaccaggcccacctggtccacctggaactgaaccgggc
aatgtgggccagtacatagcagactatcttcagagtgarggcatcagacagtacctggct
gggcctcctgggcctcctggacctccaggggaaccaggatcttctggtccatcagaagat
ggacttgtggatgatgttgccagcagagtcatcgcctacattcagagttcaggttcagga
gcccctggtcctcctggtccacctggacccgtctccgtcaatgacatcatcaatgtgttg
cagcgagaagacgtcagggcctacattacaggtccacctggtccaccaggacctcctgga
ggtccaggttttggtggctaccccttcaacacccaggatcttgctgaacgggtctacagt
ctgatgaacgagaggggggtgtcgggtcctcctggacctcctgggcctcctggaccccct
ggaaacctgttagcaactggatttcaatcccttgttggccctccgggacctcctggtgca
ccaggtactcctggaccacaaggtccgcctggaccacctggaactccaggatttgggagc
tacgtcagctcagatattcgtgattacctgcagagtgtttcctttagaggccctccagga
ccccctggacctgagggcccccctggtcccattggacagatggtctcgtttacagacccc
atagctggagagaagctgaaggctgaacgagaggaatacgtccggactgaagacggtctg
agcagagccatgtttggacttcctggtcaaccaggacccccaggacccccaggacacaag
ggagagccaggtgttcctggtgacacccccyactactccatcttggctggaaaagtaact
gattacatcaaagcacacggtcttctggaggacattgtacaaggacctccaggaccacca
ggacccccaggtccctcagggaacagcayatggtccagttctcatggaaacagcacagaa
ctgatagaattaattaaaaaccatggagccattgtgggaccaccggggagaccaggactg
aaaggggaggcgggacatcctggaccgaaaggaccaaaaggtgaacgaggccttcctgga
gctcagggacccaaaggtgacagaggagaattctcagtgacagcgaagaggaggaggagc
gctggattttga
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