Arabidopsis lyrata (lyrate rockcress): 110226329
Help
Entry
110226329 CDS
T01578
Name
(RefSeq) polyadenylate-binding protein 2-like
KO
K13126
polyadenylate-binding protein
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03015
mRNA surveillance pathway
aly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110226329
09123 Folding, sorting and degradation
03018 RNA degradation
110226329
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
110226329
03041 Spliceosome [BR:
aly03041
]
110226329
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
110226329
mRNA cycle factors
Stress granule specific factors
110226329
Spliceosome [BR:
aly03041
]
Complex C
Other components
Complex C specific factors
110226329
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_5
Nup35_RRM_2
BRAP2
RRM_Rrp7
Sigma70_ner
Nop14
CCD97-like_C
Motif
Other DBs
NCBI-GeneID:
110226329
NCBI-ProteinID:
XP_020873172
LinkDB
All DBs
Position
Unknown
AA seq
611 aa
AA seq
DB search
MEELPRVSGKRNPEDDLETKQPILKKHKETSEEKDETTKRFADSVQLKSHQANLIKRAAV
IKKTLFIKNLPVAAKISDVINFFKDVGQVVRVRLTRKLSQKCYGLVDFASANEAKKALET
KNGESLHDHKISLQVNIKAPYPPLPKFCIDHKVWYKDYLRPESLLIAEDETPPNFVEGVL
FVANLSPQTKILHIKDFFKDVEEVVRVRLIVNHKGKHVGYGFVDFASANQAEKALEKKNG
EYLHGHKIFLEVAKTAPDPPRPKFNLAEKLCYEDYLRRQNLVTEEDETVEGLDETPGLVE
AVAVRKKTLFVSRLSREAEISDIINFFKDVGEVVHVRLIVDYTGKHVGDGFVEFASANEA
EKALEKKNGEYLHDHNIFLDAANKAPYPLRPKYCIDHKVWYEDYLRRESLLVEEDEAVEG
YDEILDFIEEVASRKKTLFVSNIPYKTKIQKNKTTLPKIIDFFSHVGQVVCFRLIVDHNG
EHVGCGFVEFGSAKEAEEVLKKKNGGYFSKDHKIYLDVAEISPYPLRPKYNLAEKLWSKV
ESHLIVEEEADDDEEEEEEEEEEEEEEEEEEEAEEAEEEDDNLETKPNLKKREVPMIGGF
CGKKVIFCFDD
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atggaagagcttccgagggtttcaggtaagcgaaacccggaagatgacttggagaccaag
cagcccattctcaaaaaacataaggaaacatccgaggagaaggatgagacaaccaaaaga
tttgctgatagtgtccagctcaagtctcatcaggctaatttaatcaagagagctgccgta
ataaaaaagacgctcttcattaagaatctccctgtcgcagctaaaatatcagatgtcatc
aatttcttcaaagatgttggacaagttgttcgtgttcgactaacccgcaagttatctcag
aagtgctatggccttgttgacttcgcttctgctaacgaagcaaagaaggcgctggaaacg
aagaatggtgaatctttgcatgatcataagatatctcttcaagtgaatattaaagctcca
taccctccattgcccaagttttgcatcgatcacaaggtttggtacaaagactaccttcga
ccagaaagccttctgatagcagaagatgagacacctcccaattttgttgagggagtactc
tttgttgccaatctctctccccaaactaaaatattacatatcaaggatttctttaaagat
gttgaagaagttgttcgtgttcgacttattgtaaaccacaagggtaagcatgtgggctat
ggctttgttgactttgcttctgctaaccaagcagagaaggcgttggaaaagaagaatggc
gaatatttgcatggtcataagatttttcttgaagtcgctaagacagctccagaccctcca
cgacccaagttcaaccttgcagagaagctttgttacgaagactacctccgacgacaaaac
cttgtgacagaagaagatgagacagtggaaggacttgatgaaactcccggtcttgttgag
gcagttgctgtaaggaaaaagacgctctttgtttcccgtctctctcgcgaagctgaaata
tcagatatcatcaatttctttaaagatgttggagaagttgttcatgttcgacttattgta
gactacacgggcaagcatgtgggcgatggctttgttgagtttgcttctgctaacgaagca
gagaaggcactggaaaagaagaatggtgaatatttgcacgatcataatatttttctcgat
gcggctaacaaagctccataccctctacgacccaagtattgcatagatcacaaggtttgg
tatgaagactaccttcgacgagaaagccttctggtagaagaagatgaggcagtggaaggc
tatgatgaaattctcgattttattgaggaagttgcttcaagaaaaaagacgctctttgtt
tccaatatcccttacaaaactaaaatacaaaagaacaaaactacattaccaaagatcatc
gattttttcagtcatgttggacaagttgtttgttttcgacttattgtagaccacaatggt
gagcatgtgggctgtggctttgtcgagtttggttctgctaaggaagcagaggaggtgctg
aaaaagaagaacggtggatatttttcgaaggatcataagatttatcttgacgtggctgag
atatctccataccctctccgacccaagtacaaccttgcagagaaactttggtcgaaggta
gaaagccatttgatagtagaagaagaagcagatgatgatgaagaagaagaagaagaagaa
gaagaagaagaagaagaagaagaagaagaagaagaagcagaagaagcagaagaagaagat
gataatttggagaccaaaccgaatctgaagaaacgtgaggtacctatgattggcggattc
tgcggtaagaaggttatcttctgttttgacgactga
DBGET
integrated database retrieval system
